Gene
RNA
| Item | Value |
|---|---|
| gene id | G96307 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 7004346 ~ 7039844 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: WW domain binding protein 1-like isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU109538 | False | 2992 | lncRNA | 0.44 | 2 | 7004346 | 7007439 |
| TU109536 | False | 3789 | lncRNA | 0.42 | 2 | 7005249 | 7009159 |
| TU109537 | False | 15049 | lncRNA | 0.42 | 20 | 7005249 | 7039844 |
| TU109539 | True | 13840 | lncRNA | 0.43 | 24 | 7005249 | 7039487 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_06954301_06958598 | NA | coding | upstream | 45743 | 6954301 ~ 6958603 (+) |
| CI01000016_06890651_06904100 | NA | coding | upstream | 99712 | 6890146 ~ 6904634 (+) |
| CI01000016_06813604_06813789 | NA | coding | upstream | 190409 | 6809807 ~ 6814285 (+) |
| CI01000016_06756366_06782229 | SETD2 | coding | upstream | 221727 | 6756366 ~ 6782619 (+) |
| CI01000016_06684506_06687365 | NA | coding | upstream | 316941 | 6684506 ~ 6687405 (+) |
| CI01000016_07178060_07180135 | NA | coding | downstream | 138216 | 7178060 ~ 7180810 (+) |
| CI01000016_07214392_07233533 | RXRBB, RXRBA, RXRB | coding | downstream | 174548 | 7214392 ~ 7234962 (+) |
| CI01000016_07445055_07456795 | SLC6A19B | coding | downstream | 405211 | 7445055 ~ 7457431 (+) |
| CI01000016_07463735_07471367 | NA | coding | downstream | 423891 | 7463735 ~ 7471828 (+) |
| CI01000016_07484583_07551063 | NA | coding | downstream | 444739 | 7484583 ~ 7551063 (+) |
| G96320 | NA | non-coding | upstream | 31418 | 6971338 ~ 6972928 (+) |
| G96319 | NA | non-coding | upstream | 33977 | 6970129 ~ 6970369 (+) |
| G96318 | NA | non-coding | upstream | 34746 | 6967566 ~ 6969600 (+) |
| G96316 | NA | non-coding | upstream | 38158 | 6965131 ~ 6966188 (+) |
| G96317 | NA | non-coding | upstream | 40465 | 6963359 ~ 6963881 (+) |
| G96335 | NA | non-coding | downstream | 9532 | 7049376 ~ 7049893 (+) |
| G96338 | NA | non-coding | downstream | 16573 | 7056417 ~ 7057100 (+) |
| G96339 | NA | non-coding | downstream | 17662 | 7057506 ~ 7057708 (+) |
| G96341 | NA | non-coding | downstream | 19292 | 7059136 ~ 7059596 (+) |
| G96342 | NA | non-coding | downstream | 21381 | 7061225 ~ 7061427 (+) |
| CI01000016_05405791_05407797 | AICDA | other | upstream | 1596483 | 5405791 ~ 5407963 (+) |
| G95792 | NA | other | upstream | 1778405 | 5219880 ~ 5225941 (+) |
| CI01000016_04829592_04837305 | NA | other | upstream | 2167691 | 4829592 ~ 4837457 (+) |
| G95648 | NA | other | upstream | 2730441 | 4272636 ~ 4273905 (+) |
| G95439 | NA | other | upstream | 3140489 | 3862175 ~ 3862305 (+) |
| G96389 | NA | other | downstream | 120797 | 7160641 ~ 7161290 (+) |
| CI01000016_07784248_07784757 | TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S | other | downstream | 744221 | 7783987 ~ 7784996 (+) |
| G97824 | NA | other | downstream | 974519 | 8014363 ~ 8015775 (+) |
| G98288 | NA | other | downstream | 1956254 | 8996098 ~ 9002717 (+) |
| CI01000016_09796196_09842235 | NA | other | downstream | 2755787 | 9795950 ~ 9842576 (+) |
