G96347


Basic Information

Item Value
gene id G96347
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 7067239 ~ 7067621 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU109595
GCAAACTTGGTCATATAATTTTAACATAGTGTGATGATAAAAACATTAAACACTCACAAAATTCATCAAAAGATCCAGGCTGCTATTGTTTACAAATTCAACACACATTTTACAGAAATGACAAAGTTTTTCTAAATATATAAAAATTGGCCATCTCAATAACAGTCGTGAAAGATTAAAGTAATATCACAAGTACCATTATTTCTACCATCTATACTATTCAGCAGCTTTTCTTAAACTATACACGTGTTATGATAACTTAAATATAAGACATGAAGCCTAATAAATGGCTCAGGGTAATTTCAATCCTGTGTTCATCATGCTTGTAGAGGTACCTACACTGTTAAATAGTTTAGAAAGATTGTAATGTTTTGGAATACAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109595 True 383 lncRNA 0.30 1 7067239 7067621

Neighbor

gene id symbol gene type direction distance location
CI01000016_06954301_06958598 NA coding upstream 108636 6954301 ~ 6958603 (+)
CI01000016_06890651_06904100 NA coding upstream 162605 6890146 ~ 6904634 (+)
CI01000016_06813604_06813789 NA coding upstream 253302 6809807 ~ 6814285 (+)
CI01000016_06756366_06782229 SETD2 coding upstream 284620 6756366 ~ 6782619 (+)
CI01000016_06684506_06687365 NA coding upstream 379834 6684506 ~ 6687405 (+)
CI01000016_07178060_07180135 NA coding downstream 110439 7178060 ~ 7180810 (+)
CI01000016_07214392_07233533 RXRBB, RXRBA, RXRB coding downstream 146771 7214392 ~ 7234962 (+)
CI01000016_07445055_07456795 SLC6A19B coding downstream 377434 7445055 ~ 7457431 (+)
CI01000016_07463735_07471367 NA coding downstream 396114 7463735 ~ 7471828 (+)
CI01000016_07484583_07551063 NA coding downstream 416962 7484583 ~ 7551063 (+)
G96344 NA non-coding upstream 3435 7063559 ~ 7063804 (+)
G96342 NA non-coding upstream 5812 7061225 ~ 7061427 (+)
G96341 NA non-coding upstream 7643 7059136 ~ 7059596 (+)
G96339 NA non-coding upstream 9531 7057506 ~ 7057708 (+)
G96338 NA non-coding upstream 10139 7056417 ~ 7057100 (+)
G96350 NA non-coding downstream 3771 7071392 ~ 7072805 (+)
G96359 NA non-coding downstream 17747 7085368 ~ 7085785 (+)
G96365 NA non-coding downstream 38358 7105979 ~ 7106207 (+)
G96376 NA non-coding downstream 49609 7117230 ~ 7117462 (+)
G96383 NA non-coding downstream 72654 7140275 ~ 7140478 (+)
CI01000016_05405791_05407797 AICDA other upstream 1659376 5405791 ~ 5407963 (+)
G95792 NA other upstream 1841298 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 2230584 4829592 ~ 4837457 (+)
G95648 NA other upstream 2793334 4272636 ~ 4273905 (+)
G95439 NA other upstream 3203382 3862175 ~ 3862305 (+)
G96389 NA other downstream 93020 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 716444 7783987 ~ 7784996 (+)
G97824 NA other downstream 946742 8014363 ~ 8015775 (+)
G98288 NA other downstream 1928477 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 2728010 9795950 ~ 9842576 (+)

Expression


Co-expression Network