Gene
RNA
| Item | Value |
|---|---|
| gene id | G97603 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 7161349 ~ 7161572 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU111076 | True | 224 | lncRNA | 0.50 | 1 | 7161349 | 7161572 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_07127481_07148708 | NA | coding | downstream | 12454 | 7127465 ~ 7148895 (-) |
| CI01000016_07118966_07120089 | NA | coding | downstream | 41260 | 7118855 ~ 7120089 (-) |
| CI01000016_07088885_07090963 | NA | coding | downstream | 70306 | 7088688 ~ 7091043 (-) |
| CI01000016_07056612_07073504 | NA | coding | downstream | 87370 | 7056382 ~ 7074008 (-) |
| CI01000016_06998707_07047702 | NA | coding | downstream | 113647 | 6998534 ~ 7047702 (-) |
| CI01000016_07191021_07191531 | NA | coding | upstream | 29436 | 7191008 ~ 7191791 (-) |
| CI01000016_07204062_07211287 | NA | coding | upstream | 42420 | 7203992 ~ 7212446 (-) |
| CI01000016_07242123_07296094 | FHOD3 | coding | upstream | 79201 | 7240773 ~ 7296702 (-) |
| CI01000016_07318179_07319855 | NA | coding | upstream | 156556 | 7318128 ~ 7319855 (-) |
| CI01000016_07421716_07426983 | FHOD3B | coding | upstream | 260018 | 7421590 ~ 7442256 (-) |
| G97601 | NA | non-coding | downstream | 723 | 7159973 ~ 7160626 (-) |
| G97594 | NA | non-coding | downstream | 38033 | 7122924 ~ 7123316 (-) |
| G97590 | NA | non-coding | downstream | 45523 | 7115592 ~ 7115826 (-) |
| G97589 | NA | non-coding | downstream | 46304 | 7114828 ~ 7115045 (-) |
| G97640 | NA | non-coding | upstream | 299619 | 7461191 ~ 7461463 (-) |
| G97646 | NA | non-coding | upstream | 319639 | 7481211 ~ 7534573 (-) |
| G97656 | NA | non-coding | upstream | 389380 | 7550952 ~ 7552253 (-) |
| G97970 | NA | non-coding | upstream | 542046 | 7703618 ~ 7703843 (-) |
| G97947 | NA | non-coding | upstream | 548407 | 7709979 ~ 7717050 (-) |
| G97341 | NA | other | downstream | 1001628 | 6158986 ~ 6159721 (-) |
| CI01000016_05412782_05415867 | NA | other | downstream | 1743132 | 5412248 ~ 5415906 (-) |
| CI01000016_05325805_05330265 | COX6B2 | other | downstream | 1830503 | 5325519 ~ 5332874 (-) |
| CI01000016_04921091_04922518 | NA | other | downstream | 2237945 | 4918975 ~ 4922518 (-) |
| CI01000016_03921124_03930996 | NA | other | downstream | 3230298 | 3920055 ~ 3931162 (-) |
| CI01000016_08893013_08893496 | NPPCL, ANFC1 | other | upstream | 1727261 | 8888833 ~ 8894737 (-) |
| CI01000016_08926089_08945071 | NA | other | upstream | 1775217 | 8925960 ~ 8945229 (-) |
| G98679 | NA | other | upstream | 2073424 | 9234996 ~ 9239929 (-) |
| G98691 | NA | other | upstream | 2094530 | 9256102 ~ 9257611 (-) |
| CI01000016_09510177_09512196 | ID4 | other | upstream | 2348050 | 9509622 ~ 9512428 (-) |
