G96414


Basic Information

Item Value
gene id G96414
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 7263718 ~ 7264594 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU109662
CTTGGATTTTGTCTCAAAGAGGTTTTCCAACTTGGCCGTGTCCAGTTTGACCGGATCCAGTTTGGACCACAGTGACTCCCTGCATCTCTTGTGGTTGTTGTACTGCCAGTCTATCGGTCTCACCTCATTCCAAAACAGCCGAATGGTCTTCTTCTTTTTCTGGAAGAGCGGGGGTTCTCCTCGACTAAGCTGAGGAGATCCAAGATGTGGGGGAGGTATTGAAGCCAAAAAGGGTGGTGGAGGAGGCATCATCATGCCAGGGATAGGGGGAGGTGGAAGGCAGGGAGGAGGAGGTGGCGTGAGGTCACTTGGCCCGATCACATTACTGACATCCAAAATGTCCACATCATCCTCCTCTCCCAAGTCCGTGAAGTCCAGCTCTTTGATGCGAAGCTCCCGTGGCATGGCCATCAGCTGGTCCCATATGTGGTCTGACTCCTTTTTGGGGGGTGTTGGTGAAGGAGCCGGTGGAGGCTTTTCCTGTGCTTGCTGCTTTTCCTTCCCAGAATGCTCCACCTCATGAGGGGATACCAGTCCTTTCACCAAATCTCCAAATTTCTCAGCCACAGCCCTCACATTACCCTGGTTATCGAGATGCTCCACTTCCAATTTCTTCATGTTATCCTCGCATGCCTGCCGACGCGCCTCCAGAGTGGAAATGCGACTAGCGAGGCTGGTCACAGAGGAGTCCTGATCTGAACACCCTTTCTCATTCTCATTCTCCTTTTCTTTCTCATCTTCCTCTCCCTTTTTGTTTTGGGCATAAAGCATGTCCAGCATGAAGCGTTTGCTGTTGAGAACATTGTTGCACTGATCGTTGGCGTCCGCTGTATTCATACAGTCTGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU109662 True 847 lncRNA 0.51 2 7263718 7264594

Neighbor

gene id symbol gene type direction distance location
CI01000016_07214392_07233533 RXRBB, RXRBA, RXRB coding upstream 28956 7214392 ~ 7234962 (+)
CI01000016_07178060_07180135 NA coding upstream 82908 7178060 ~ 7180810 (+)
CI01000016_06954301_06958598 NA coding upstream 305115 6954301 ~ 6958603 (+)
CI01000016_06890651_06904100 NA coding upstream 359084 6890146 ~ 6904634 (+)
CI01000016_06813604_06813789 NA coding upstream 449781 6809807 ~ 6814285 (+)
CI01000016_07445055_07456795 SLC6A19B coding downstream 180461 7445055 ~ 7457431 (+)
CI01000016_07463735_07471367 NA coding downstream 199141 7463735 ~ 7471828 (+)
CI01000016_07484583_07551063 NA coding downstream 219989 7484583 ~ 7551063 (+)
CI01000016_07711605_07715888 SP8, SP8B coding downstream 447011 7711605 ~ 7716261 (+)
CI01000016_07743396_07746536 MACC1 coding downstream 478494 7743088 ~ 7747383 (+)
G96276 NA non-coding upstream 21432 7235167 ~ 7242286 (+)
G96406 NA non-coding upstream 52295 7205589 ~ 7211423 (+)
G96405 NA non-coding upstream 58217 7205151 ~ 7205501 (+)
G96397 NA non-coding upstream 81479 7182011 ~ 7182239 (+)
G96415 NA non-coding downstream 20477 7285071 ~ 7286600 (+)
G96283 NA non-coding downstream 45450 7310044 ~ 7311878 (+)
G96453 NA non-coding downstream 65172 7329766 ~ 7331011 (+)
G96518 NA non-coding downstream 289616 7554210 ~ 7554540 (+)
G97724 NA non-coding downstream 387448 7652042 ~ 7652353 (+)
G96389 NA other upstream 102428 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 1855855 5405791 ~ 5407963 (+)
G95792 NA other upstream 2037777 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 2427063 4829592 ~ 4837457 (+)
G95648 NA other upstream 2989813 4272636 ~ 4273905 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 519471 7783987 ~ 7784996 (+)
G97824 NA other downstream 749769 8014363 ~ 8015775 (+)
G98288 NA other downstream 1731504 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 2531037 9795950 ~ 9842576 (+)
G99041 NA other downstream 2659824 9924418 ~ 9925654 (+)

Expression


Co-expression Network