Gene
RNA
| Item | Value |
|---|---|
| gene id | G96518 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 7554210 ~ 7554540 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: secretogranin-2-like |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU109781 | True | 331 | lncRNA | 0.37 | 1 | 7554210 | 7554540 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_07484583_07551063 | NA | coding | upstream | 3147 | 7484583 ~ 7551063 (+) |
| CI01000016_07463735_07471367 | NA | coding | upstream | 82382 | 7463735 ~ 7471828 (+) |
| CI01000016_07445055_07456795 | SLC6A19B | coding | upstream | 96779 | 7445055 ~ 7457431 (+) |
| CI01000016_07214392_07233533 | RXRBB, RXRBA, RXRB | coding | upstream | 319448 | 7214392 ~ 7234962 (+) |
| CI01000016_07178060_07180135 | NA | coding | upstream | 373400 | 7178060 ~ 7180810 (+) |
| CI01000016_07711605_07715888 | SP8, SP8B | coding | downstream | 157065 | 7711605 ~ 7716261 (+) |
| CI01000016_07743396_07746536 | MACC1 | coding | downstream | 188548 | 7743088 ~ 7747383 (+) |
| CI01000016_07759095_07759370 | NA | coding | downstream | 204555 | 7759095 ~ 7761274 (+) |
| CI01000016_07784248_07784757 | TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S | coding | downstream | 229447 | 7783987 ~ 7784996 (+) |
| CI01000016_07851297_07854401 | NA | coding | downstream | 296216 | 7850756 ~ 7854610 (+) |
| G96453 | NA | non-coding | upstream | 223199 | 7329766 ~ 7331011 (+) |
| G96283 | NA | non-coding | upstream | 242332 | 7310044 ~ 7311878 (+) |
| G96415 | NA | non-coding | upstream | 267610 | 7285071 ~ 7286600 (+) |
| G96414 | NA | non-coding | upstream | 289616 | 7263718 ~ 7264594 (+) |
| G96276 | NA | non-coding | upstream | 311924 | 7235167 ~ 7242286 (+) |
| G97724 | NA | non-coding | downstream | 97502 | 7652042 ~ 7652353 (+) |
| G97760 | NA | non-coding | downstream | 217098 | 7771638 ~ 7771965 (+) |
| G97764 | NA | non-coding | downstream | 223531 | 7778071 ~ 7778392 (+) |
| G97745 | NA | non-coding | downstream | 270848 | 7825388 ~ 7827695 (+) |
| G97746 | NA | non-coding | downstream | 291376 | 7845916 ~ 7847529 (+) |
| G96389 | NA | other | upstream | 392920 | 7160641 ~ 7161290 (+) |
| CI01000016_05405791_05407797 | AICDA | other | upstream | 2146347 | 5405791 ~ 5407963 (+) |
| G95792 | NA | other | upstream | 2328269 | 5219880 ~ 5225941 (+) |
| CI01000016_04829592_04837305 | NA | other | upstream | 2717555 | 4829592 ~ 4837457 (+) |
| G95648 | NA | other | upstream | 3280305 | 4272636 ~ 4273905 (+) |
| G97824 | NA | other | downstream | 459823 | 8014363 ~ 8015775 (+) |
| G98288 | NA | other | downstream | 1441558 | 8996098 ~ 9002717 (+) |
| CI01000016_09796196_09842235 | NA | other | downstream | 2241091 | 9795950 ~ 9842576 (+) |
| G99041 | NA | other | downstream | 2369878 | 9924418 ~ 9925654 (+) |
