Gene
RNA
| Item | Value |
|---|---|
| gene id | G97824 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 8014363 ~ 8015775 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU111320 | True | 1413 | TUCP | 0.44 | 1 | 8014363 | 8015775 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_07998560_08008403 | COLQ | coding | upstream | 5917 | 7998560 ~ 8008446 (+) |
| CI01000016_07969424_07983149 | HACL1 | coding | upstream | 31062 | 7968328 ~ 7983566 (+) |
| CI01000016_07956184_07965721 | C16H2ORF66 | coding | upstream | 48423 | 7956071 ~ 7965940 (+) |
| CI01000016_07937188_07955977 | ANKRD44, ANKRD28B, ANKRD28 | coding | upstream | 57906 | 7937188 ~ 7956457 (+) |
| CI01000016_07851297_07854401 | NA | coding | upstream | 159753 | 7850756 ~ 7854610 (+) |
| CI01000016_08034844_08037586 | FKBP14 | coding | downstream | 19069 | 8034844 ~ 8038025 (+) |
| CI01000016_08090285_08090545 | NA | coding | downstream | 74510 | 8090285 ~ 8090594 (+) |
| CI01000016_08092843_08098938 | CPVL | coding | downstream | 76998 | 8092773 ~ 8098938 (+) |
| CI01000016_08205087_08210367 | NA | coding | downstream | 189079 | 8204854 ~ 8211114 (+) |
| CI01000016_08217170_08228700 | JAZF1 | coding | downstream | 201309 | 8217084 ~ 8228778 (+) |
| G97788 | NA | non-coding | upstream | 107805 | 7906224 ~ 7906558 (+) |
| G97747 | NA | non-coding | upstream | 155182 | 7847657 ~ 7859181 (+) |
| G97746 | NA | non-coding | upstream | 166834 | 7845916 ~ 7847529 (+) |
| G97826 | NA | non-coding | downstream | 43194 | 8058969 ~ 8063310 (+) |
| CI01000016_08270091_08279026 | HIBADH, HIBADHA, HIBADHB | non-coding | downstream | 234613 | 8268720 ~ 8279924 (+) |
| G98151 | NA | non-coding | downstream | 327336 | 8343111 ~ 8343467 (+) |
| G98152 | NA | non-coding | downstream | 330917 | 8346692 ~ 8346893 (+) |
| G98155 | NA | non-coding | downstream | 342248 | 8358023 ~ 8358279 (+) |
| CI01000016_07784248_07784757 | TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S | other | upstream | 228640 | 7783987 ~ 7784996 (+) |
| G96389 | NA | other | upstream | 853073 | 7160641 ~ 7161290 (+) |
| CI01000016_05405791_05407797 | AICDA | other | upstream | 2606500 | 5405791 ~ 5407963 (+) |
| G95792 | NA | other | upstream | 2788422 | 5219880 ~ 5225941 (+) |
| CI01000016_04829592_04837305 | NA | other | upstream | 3177708 | 4829592 ~ 4837457 (+) |
| G98288 | NA | other | downstream | 980323 | 8996098 ~ 9002717 (+) |
| CI01000016_09796196_09842235 | NA | other | downstream | 1779856 | 9795950 ~ 9842576 (+) |
| G99041 | NA | other | downstream | 1908643 | 9924418 ~ 9925654 (+) |
| G99410 | NA | other | downstream | 2218625 | 10234400 ~ 10236851 (+) |
| G99456 | NA | other | downstream | 2278616 | 10294391 ~ 10298904 (+) |
