G98177


Basic Information

Item Value
gene id G98177
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8406065 ~ 8406296 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU111710
GCAGTTTTGGAGATGCTCTGACCCAGTCGTCTAGCCATCACAATTTGGCCCTTGTCAAACTCGCTCAAATCCTTACGCTTGCCCATTTTTCCTGCTTCTAACACATCAACTTTGAGGATAAAATGTTCACTTGCTGCCTAATATATCCCACCCACTAACAGGTGCCGTGATGAAGAGAGAATCAGTGTTATTCACTTCACCTGTCAGTGGTCATAATGTTATGCCTATATAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU111710 True 232 lncRNA 0.43 1 8406065 8406296

Neighbor

gene id symbol gene type direction distance location
CI01000016_08390421_08396972 NA coding upstream 8310 8390289 ~ 8397755 (+)
CI01000016_08323079_08336573 SKAP2 coding upstream 69378 8323079 ~ 8336687 (+)
CI01000016_08315282_08316952 HOXA2B, HOXA2 coding upstream 88887 8314973 ~ 8317178 (+)
CI01000016_08304658_08306198 HOXA9B coding upstream 99273 8302914 ~ 8306792 (+)
CI01000016_08299340_08301616 HOXA10B coding upstream 104449 8299340 ~ 8301616 (+)
CI01000016_08450823_08453343 NA coding downstream 44332 8450628 ~ 8453377 (+)
CI01000016_08513514_08545976 OSBPL3B, OSBPL3 coding downstream 107218 8513514 ~ 8546137 (+)
CI01000016_08553934_08565167 DFNA5 coding downstream 146547 8552843 ~ 8565246 (+)
CI01000016_08628196_08630801 NA coding downstream 221900 8628196 ~ 8631378 (+)
CI01000016_08675783_08684401 KCNJ14 coding downstream 267115 8673411 ~ 8684506 (+)
G98169 NA non-coding upstream 29252 8376521 ~ 8376813 (+)
G98103 NA non-coding upstream 31483 8358645 ~ 8374582 (+)
G98155 NA non-coding upstream 47786 8358023 ~ 8358279 (+)
G98152 NA non-coding upstream 59172 8346692 ~ 8346893 (+)
G98193 NA non-coding downstream 51653 8457949 ~ 8458166 (+)
G98195 NA non-coding downstream 52532 8458828 ~ 8459071 (+)
G98098 NA non-coding downstream 160533 8566829 ~ 8569687 (+)
G98220 NA non-coding downstream 198302 8604598 ~ 8604812 (+)
G98221 NA non-coding downstream 198927 8605223 ~ 8605440 (+)
G97824 NA other upstream 390290 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 620342 7783987 ~ 7784996 (+)
G96389 NA other upstream 1244775 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 2998202 5405791 ~ 5407963 (+)
G95792 NA other upstream 3180124 5219880 ~ 5225941 (+)
G98288 NA other downstream 589802 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 1389335 9795950 ~ 9842576 (+)
G99041 NA other downstream 1518122 9924418 ~ 9925654 (+)
G99410 NA other downstream 1828104 10234400 ~ 10236851 (+)
G99456 NA other downstream 1888095 10294391 ~ 10298904 (+)

Expression


Co-expression Network