Item | Value |
---|---|
gene id | G98222 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000016 |
NCBI id | null |
chromosome length | 12175457 |
location | 8607402 ~ 8607866 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU111756 | True | 465 | lncRNA | 0.40 | 1 | 8607402 | 8607866 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000016_08553934_08565167 | DFNA5 | coding | upstream | 42156 | 8552843 ~ 8565246 (+) |
CI01000016_08513514_08545976 | OSBPL3B, OSBPL3 | coding | upstream | 61265 | 8513514 ~ 8546137 (+) |
CI01000016_08450823_08453343 | NA | coding | upstream | 154025 | 8450628 ~ 8453377 (+) |
CI01000016_08390421_08396972 | NA | coding | upstream | 209647 | 8390289 ~ 8397755 (+) |
CI01000016_08323079_08336573 | SKAP2 | coding | upstream | 270715 | 8323079 ~ 8336687 (+) |
CI01000016_08628196_08630801 | NA | coding | downstream | 20330 | 8628196 ~ 8631378 (+) |
CI01000016_08675783_08684401 | KCNJ14 | coding | downstream | 65545 | 8673411 ~ 8684506 (+) |
CI01000016_08696516_08734418 | MYH14 | coding | downstream | 88650 | 8696516 ~ 8734660 (+) |
CI01000016_08748359_08750572 | NA | coding | downstream | 140493 | 8748359 ~ 8750736 (+) |
CI01000016_08752386_08753821 | RPL18.L, RPL18.S, RPL18 | coding | downstream | 144520 | 8752386 ~ 8753821 (+) |
G98221 | NA | non-coding | upstream | 1962 | 8605223 ~ 8605440 (+) |
G98220 | NA | non-coding | upstream | 2590 | 8604598 ~ 8604812 (+) |
G98098 | NA | non-coding | upstream | 37715 | 8566829 ~ 8569687 (+) |
G98195 | NA | non-coding | upstream | 148331 | 8458828 ~ 8459071 (+) |
G98193 | NA | non-coding | upstream | 149236 | 8457949 ~ 8458166 (+) |
G98223 | NA | non-coding | downstream | 5098 | 8612964 ~ 8613740 (+) |
G98225 | NA | non-coding | downstream | 10670 | 8618536 ~ 8618854 (+) |
G98106 | NA | non-coding | downstream | 25057 | 8632923 ~ 8634430 (+) |
G98230 | NA | non-coding | downstream | 34322 | 8642188 ~ 8642410 (+) |
G98231 | NA | non-coding | downstream | 34895 | 8642761 ~ 8642978 (+) |
G97824 | NA | other | upstream | 591627 | 8014363 ~ 8015775 (+) |
CI01000016_07784248_07784757 | TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S | other | upstream | 821679 | 7783987 ~ 7784996 (+) |
G96389 | NA | other | upstream | 1446112 | 7160641 ~ 7161290 (+) |
CI01000016_05405791_05407797 | AICDA | other | upstream | 3199539 | 5405791 ~ 5407963 (+) |
G95792 | NA | other | upstream | 3381461 | 5219880 ~ 5225941 (+) |
G98288 | NA | other | downstream | 388232 | 8996098 ~ 9002717 (+) |
CI01000016_09796196_09842235 | NA | other | downstream | 1187765 | 9795950 ~ 9842576 (+) |
G99041 | NA | other | downstream | 1316552 | 9924418 ~ 9925654 (+) |
G99410 | NA | other | downstream | 1626534 | 10234400 ~ 10236851 (+) |
G99456 | NA | other | downstream | 1686525 | 10294391 ~ 10298904 (+) |