G98641


Basic Information

Item Value
gene id G98641
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8690872 ~ 8715924 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU112254
GAGGAAGAGTTTGAATATCTGAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAGCTCAGAGATGAAGGGGTCAGATGACTGATGCAGGAGAGATGCCACATTATCGTTTAAAGGATCCATGTTCTTCACCAGCCACTCATCTGCCTTATAGTCCACCTTGCCAGCATAATGTATAATGGAGAAGTCGGCCTCTTCTTTAAGCTGCCGTGGCCGCATGAACTTTGAGTGTGAACCCTGCTCAGCTGACAGTTTGTCCACAAATGAGCGATCAGTTGCCCTCGGGAACCAACACTCCTCATCCAACAATGCCAGCACGCCAGGAGGATGGGCCGGTCTCTCAATGAGGTCGATACAGGGCTGAAGATCCAGACCGAAGTCGATGAAGTTCCACTCGATGCCCTCTCGCTGATACTCCTCTTGCTCCAGTACAAACATGGTGTGATTAAACAGCTGCTGCAGTTTCTCATTAGTGTAGTTGATACATAACTGCTCGAATGAGTTCAGCTGGAAGATCTCAAATCCAGCAATATCCAGGATCCCGATGAACGAAGCTCCCTGACGCTGCCTGCGGTCCAGGGCTCTGTTGATCCGATGCACTAGCCAGCGGAACAGACGTTCATATGTGGCCTTCGCTAAAGCCTCTATCGCAAAATCAGCCTGCTGCTTGGTCTGGGCCTTCTGGACATACTCGCGGCCCACTTTGATGCGGGGAGTGAGAATGGCTCGACTGAACTCCAGTACACTGATGCCCAGCAGGTGGCAGAGCTTCTGCGCTGCTGTGTCATCCGGCATTGAGGCCTGATCTGTGTTCTTCTCTTTGTGAAACGTGATGTTCCCAAACTGCAGCACTGCAGAGATCACCTTTAACATAGATGTGGATTCTTCCTGGGTGAAGCCCATGATGGTCACTGAATCCATTGTCTGAGTGAAGTTTTCTGAATCACTCTGACCCGGAACAGGAAGTGATCCCCCGCAGAGGAAGCGGTATTGATCCGCGCTGCCTAGCAGAAGCTCCTTTCTCATGGCCTCAGAAGCTCCAGAGAGGAGCTGGTAGAAGATATGGAAGGTTCGCTCGTCTTTAGCCTGCCTAATAGCTCGAGACTTCTCCAGCAGATAGGTCTCAATATTAGCACCAACAATATATCCAGCAACATCAAAATTGATCCTGATGAATTTGCCAAATCTGGAAGAGTTGTCGTTTTTGACTGTTTTGGCATTGCCGAAGGCCTCAAGGATGGGGTTCGCTTGCAGTAACTGTCTCTCCAGCTCACCCCTGTTCACAGCACTACTGCCACGACCCAGAGAGCGCGTACCATCCATCTGTGGGGCGCTGTCTTTGGGCCGTCCCAGAGTGCCAGACTTGTGTGAGGACGCCACATGTGCCAGATACTGAATCACTTTTTTTGTGTTCTCTGTCTTTCCTGCACCAGATTCCCCTGTGCACAGGATGGCCTGATCTTCTCTGTCTTGCAGCATGCTCCTGTAGGCCGCCTCCGATATGGCGTAGATATGTGGAGGCATCTCATGCCGTTTCTTCCCACGATACATCTCTATGATGGATTCTGTGTAGATGGGCAGGTTCTTATAGGGGTTGATCACCACACAAAACAGGCCGGAGTATGTATATATGAGTCCTGAATAGTATCTCTCTCGTAGATTGTGTAAGACAGAGGCCTCATTGAGGCATGTGAGATCGGCCATGTCTTCAACTTTACTGAATCGAGGTGGGTTCATCCGCTGGAGCTCCTCCCTCGAAAGCGTCATTTTCTTCCCACTGTCAGTAAGCTCCACGTCCACCTCGTCGCCCCGCTCCTCGCGCACACTTTGGCTGGAGGCGGAGAACTTTGAGGTTGGTGACCCAGGCCCCGCCCCCGTGGCCAGGAAGCGGGTGACATCATTAGCACTGCCCCCCGCTGGCCTGGACATGGTTGTAGCACTTAAACGTGTTAATCCACTCTCAGGATATGACTAGCTGTGAAGAGAAAAGAAACGTGCTCTCGTGTTTTTCTTTTCAGTGTGAGAGTGCTAATAGTGCAAATGCGGCTTTTCACATTACAGCGCTCCCGTGAAGCCGCAAACTCATTCACACTGAGAATAAAATAGACAGTAAAGCGAAGTGATGGCAAACGGAGGACTTCACCAAAACGCCGACGCTTCCTCACTATTGACCAATAGCGTTCAGGATTTACA
>TU112255
GGCACAGTCGTGGGCATGTGTCAGGACTGAATGATCGCTAAAAACATGTGGGGAACAACTCTAGCTAAAAGGGAAACACTCACATATATGAGTCCTGAATAGTATCTCTCTCGTAGATTGTGTAAGACAGAGGCCTCATTGAGGCATGTGAGATCGGCCATGTCTTCAACTTTACTGAATCGAGGTGGGTTCATCCGCTGGAGCTCCTCCCTCGAAAGCGTCATTTTCTTCCCACTGTCAGTAAGCTCCACGTCCACCTCGTCGCCCCGCTCCTCGCGCACACTTTGGCTGGAGGCGGAGAACTTTGAGGTTGGTGACCCAGGCCCCGCCCCCGTGGCCAGGAAGCGGGTGACATCATTAGCACTGCCCCCCGCTGGCCTGGACATGGTTGTAGCACTTAAACGTGTTAATCCACTCTCAGGATATGACTAGCTGTGAAGAGAAAAGAAACGTGCTCTCGTGTTTTTCTTTTCAGTGTGAGAGTGCTAATAGTGCAAATGCGGCTTTTCACATTACAGCGCTCCCGTGAAGCCGCAAACTCATTCACACTGAGAATAAAATAGACAGTAAAGCGAAGTGATGGCAAACGGAGGACTTCACCAAAACGCCGACGCTTCCTCACTATTGACCAATAGCGTTCAGGATTTACA
>TU112258
TATTAACCACAAACACACCCTGAAGAGCAGGATACAGGGTGAAAAATCTCAGTGTCTCAGTCATGCCTGGGGTTTCACACTGTTACTAAGTGTGTGAAAGATCTGAAACTTCCTGTAGCAACATGAAACTGGTTCCTTCTTTATAATATTTTGACGCAGAGGTGTATGAATAAATTCACATAAACTGAAGCAGCCTACAGTAGGTTAGCTGGTTGCCATGGTACCTTGCAGCATGCTCCTGTAGGCCGCCTCCGATATGGCGTAGATATGTGGAGGCATCTCATGCCGTTTCTTCCCACGATACATCTCTATGATGGATTCTGTGTAGATGGGCAGGTTCTTATAGGGGTTGATCACCACACAAAACAGGCCGGAGTATGTATATATGAGTCCTGAATAGTATCTCTCTCGTAGATTGTGTAAGACAGAGGCCTCATTGAGGCATGTGAGATCGGCCATGTCTTCAACTTTACTGAATCGAGGTGGGTTCATCCGCTGGAGCTCCTCCCTCGAAAGCGTCATTTTCTTCCCACTGTCAGTAAGCTCCACGTCCACCTCGTCGCCCCGCTCCTCGCGCACACTTTGGCTGGAGGCGGAGAACTTTGAGGTTGGTGACCCAGGCCCCGCCCCCGTGGCCAGGAAGCGGGTGACATCATTAGCACTGCCCCCCGCTGGCCTGGACATGGTTGTAGCACT
>TU112253
GCAGACCAGACTAAAAATGAAACTTTTAAACCTTTTTTGTTATGACTAACAACACTACGTGTTGTGCAGCAGAGTAGTGCAAGAATTTCAAATATTCAAGGGGACAATTTGGCCATTTCTAATTATTGGCGGGGGCTAGGGGCTTGTCCCCCTCAATGTCTATGGTGGTTACGGCCCTGTCCAAATGTTTTGATATGCAACACTGTTAACGGATGGTTCAGACAAAAGCTGCGATTTATTGCTTGATGCTTTGACACCTAAGTTTAAAAACACTGGAATATTTAATGTGTGAATATTTAAATGAAGTCAGTCTGCAAAGTACATCTGTAGTATTTCAAAGCACTACATGTACACACCTGCTGCTTGGTCTGGGCCTTCTGGACATACTCGCGGCCCACTTTGATGCGGGGAGTGAGAATGGCTCGACTGAACTCCAGTACACTGATGCCCAGCAGGTGGCAGAGCTTCTGCGCTGCTGTGTCATCCGGCATTGAGGCCTGATCTGTGTTCTTCTCTTTGTGAAACGTGATGTTCCCAAACTGCAGCACTGCAGAGATCACCTTTAACATAGATGTGGATTCTTCCTGGGTGAAGCCCATGATGGTCACTGAATCCATTGTCTGAGTGAAGTTTTCTGAATCACTCTGACCCGGAACAGGAAGTGATCCCCCGCAGAGGAAGCGGTATTGATCCGCGCTGCCTAGCAGAAGCTCCTTTCTCATGGCCTCAGAAGCTCCAGAGAGGAGCTGGTAGAAGATATGGAAGGTTCGCTCGTCTTTAGCCTGCCTAATAGCTCGAGACTTCTCCAGCAGATAGGTCTCAATATTAGCACCAACAATATATCCAGCAACATCAAAATTGATCCTGATGAATTTGCCAAATCTGGAAGAGTTGTCGTTTTTGACTGTTTTGGCATTGCCGAAGGCCTCAAGGATGGGGTTCGCTTGCAGTAACTGTCTCTCCAGCTCACCATACTGCATAGTCTGTGGGGCGCTGTCTTTGGGCCGTCCCAGAGTGCCAGACTTGTGTGAGGACGCCACATGTGCCAGATACTGAATCACTTTTTTTGTGTTCTCTGTCTTTCCTGCACCAGATTCCCCTGTGCACAGGATGGCCTGATCTTCTCTGTCTTGCAGCATGCTCCTGTAGGCCGCCTCCGATATGGCGTAGATATGTGGAGGCATCTCATGCCGTTTCTTCCCACGATACATCTCTATGATGGATTCTGTGTAGATGGGCAGGTTCTTATAGGGGTTGATCACCACACAAAACAGGCCGGAGTATGTATATATGAGTCCTGAATAGTATCTCTCTCGTAGATTGTGTAAGACAGAGGCCTCATTGAGGCATGTGAGATCGGCCATGTCTTCAACTTTACTGAATCGAGGTGGGTTCATCCGCTGGAGCTCCTCCCTCGAAAGCGTCATTTTCTTCCCACTGTCAGTAAGCTCCACGTCCACCTCGTCGCCCCGCTCCTCGCGCACACTTGCAGACT
>TU112256
AGCAGAGCAGGCTCACGGAAAGGAGTTTAGAGAGACCGAATACTTGATCTAATTGTTTCAGACACTGTGAGAAAAGAGCTGATGCTGCAATGTATATTATGAGAAAATTAAAGTGTTTTTTGAGCTTGGATGCATGTAAACCTATTATAGGAGACCTCCAAAAGATCATTAGGAAACTTTAAAATAGCATAATAGAGGCACTTTACAGATACGTTAAGAAGAGAGAGATGCTAAGAAAAGAGAAGTACCATGGTAATTTTTCAATTTCTCTTTTTATTCTTACCCTTTTCTCATGGTTGGGGATGATGCAGCGCAGGAAGTTGGGGTTGGTGTTGCGGAGGGTGGCCATCAGTTTAGTGAGGGACTCTTTGTAGAGTTGCCCCACCGTACGAAACATGCCCTTCTTTGTCTTGAGCCCAGCGGCCCCAAAATTCACCGGTCCACTGTTCTCACTGGACGACACCTGGTCCAGACCCACAATCCTCTCCACCTCCCTCCAGAGCTCAGAGATGAAGGGGTCAGATGACTGATGCAGGAGAGATGCCACATTATCGTTTAAAGGATCCATGTTCTTCACCAGCCACTCATCTGCCTTATAGTCCACCTGACAGATGTTGCAGAAACTGCATACATCACCTTTAAAACCTTTGGATCTGGCTCACCTGGAAGATCTCAAATCCAGCAATATCCAGGATCCCGATGAACGAAGCTCCCTGACGCTGCCTGCGGTCCAGGGCTCTGTTGATCCGATGCACTAGCCAGCGGAACAGACGTTCATATGTGGCCTTCGCTAAAGCCTCTATCGCAAAATCACCTGCTGCTTGGTCTGGGCCTTCTGGACATACTCGCGGCCCACTTTGATGCGGGGAGTGAGAATGGCTCGACTGAACTCCAGTACACTGATGCCCAGCAGGTGGCAGAGCTTCTGCGCTGCTGTGTCATCCGGCATTGAGGCCTGATCTGTGTTCTTCTCTTTGTGAAACGTGATGTTCCCAAACTGCAGCACTGCAGAGATCACCTTTAACATAGCTGAAAAGAGAGAGAGTGATCAGAAAATCTTCTTTTACATTTTTTATGAACTCTTGTGGAGTTTTCCTTCTAGATCTATTTGAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112254 False 2238 lncRNA 0.50 17 8690872 8714885
TU112255 False 650 lncRNA 0.50 3 8690872 8700746
TU112258 False 696 lncRNA 0.50 3 8696514 8703580
TU112253 False 1495 lncRNA 0.48 10 8700455 8709668
TU112256 True 1115 lncRNA 0.47 4 8709012 8715924

Neighbor

gene id symbol gene type direction distance location
CI01000016_08642218_08643021 NA coding downstream 47851 8641441 ~ 8643021 (-)
CI01000016_08605369_08623062 STK31 coding downstream 67810 8605247 ~ 8623062 (-)
CI01000016_08598259_08602660 NPY coding downstream 88212 8598231 ~ 8602660 (-)
CI01000016_08570850_08582638 MPP6, MPP6A coding downstream 107965 8570293 ~ 8582907 (-)
CI01000016_08421119_08444481 PDE11AL coding downstream 245770 8421097 ~ 8445102 (-)
CI01000016_08741387_08746007 NA coding upstream 25058 8740982 ~ 8746066 (-)
CI01000016_08769141_08795202 NA coding upstream 52898 8768822 ~ 8795559 (-)
CI01000016_08800360_08805384 NA coding upstream 82483 8798407 ~ 8805384 (-)
CI01000016_08833925_08836497 NA coding upstream 117566 8833490 ~ 8836497 (-)
CI01000016_08851218_08869647 IFFO1B coding upstream 134948 8850872 ~ 8869647 (-)
G98628 NA non-coding downstream 15373 8658921 ~ 8675499 (-)
G98615 NA non-coding downstream 70342 8620184 ~ 8620530 (-)
G98613 NA non-coding downstream 73408 8617244 ~ 8617464 (-)
G98612 NA non-coding downstream 74273 8616369 ~ 8616599 (-)
G98608 NA non-coding downstream 81982 8608563 ~ 8608890 (-)
G98630 NA non-coding upstream 18152 8734076 ~ 8738396 (-)
G98660 NA non-coding upstream 37795 8753719 ~ 8758625 (-)
G98710 NA non-coding upstream 49206 8765130 ~ 8765458 (-)
G98711 NA non-coding upstream 62438 8778362 ~ 8778594 (-)
G97341 NA other downstream 2531151 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 3272655 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 3360026 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 3767468 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 4759821 3920055 ~ 3931162 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 172909 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 220865 8925960 ~ 8945229 (-)
G98679 NA other upstream 519072 9234996 ~ 9239929 (-)
G98691 NA other upstream 540178 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 793698 9509622 ~ 9512428 (-)

Expression


Co-expression Network