Gene
RNA
| Item | Value |
|---|---|
| gene id | G98318 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 8816414 ~ 8816982 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU111853 | True | 569 | lncRNA | 0.43 | 1 | 8816414 | 8816982 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_08766170_08768621 | LAG3 | coding | upstream | 47636 | 8766170 ~ 8768778 (+) |
| CI01000016_08752386_08753821 | RPL18.L, RPL18.S, RPL18 | coding | upstream | 62593 | 8752386 ~ 8753821 (+) |
| CI01000016_08748359_08750572 | NA | coding | upstream | 65678 | 8748359 ~ 8750736 (+) |
| CI01000016_08696516_08734418 | MYH14 | coding | upstream | 81754 | 8696516 ~ 8734660 (+) |
| CI01000016_08675783_08684401 | KCNJ14 | coding | upstream | 131908 | 8673411 ~ 8684506 (+) |
| CI01000016_08817749_08824067 | NA | coding | downstream | 767 | 8817749 ~ 8824078 (+) |
| CI01000016_08916022_08916606 | NA | coding | downstream | 98046 | 8915028 ~ 8916667 (+) |
| CI01000016_09026732_09050431 | NA | coding | downstream | 209750 | 9026732 ~ 9050838 (+) |
| CI01000016_09138227_09156795 | NA | coding | downstream | 320452 | 9137434 ~ 9157472 (+) |
| CI01000016_09181426_09182326 | NA | coding | downstream | 364444 | 9181426 ~ 9182326 (+) |
| G98317 | NA | non-coding | upstream | 174 | 8815636 ~ 8816240 (+) |
| G98256 | NA | non-coding | upstream | 15733 | 8783613 ~ 8800681 (+) |
| G98321 | NA | non-coding | upstream | 35508 | 8780567 ~ 8780906 (+) |
| G98320 | NA | non-coding | upstream | 37651 | 8778543 ~ 8778763 (+) |
| G98315 | NA | non-coding | upstream | 53445 | 8762713 ~ 8762969 (+) |
| G98326 | NA | non-coding | downstream | 28672 | 8845654 ~ 8847124 (+) |
| G98241 | NA | non-coding | downstream | 64027 | 8881009 ~ 8912783 (+) |
| G98272 | NA | non-coding | downstream | 72860 | 8889842 ~ 8894794 (+) |
| G98289 | NA | non-coding | downstream | 126235 | 8943217 ~ 8945455 (+) |
| G98356 | NA | non-coding | downstream | 161250 | 8978232 ~ 8978540 (+) |
| G97824 | NA | other | upstream | 800639 | 8014363 ~ 8015775 (+) |
| CI01000016_07784248_07784757 | TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S | other | upstream | 1030691 | 7783987 ~ 7784996 (+) |
| G96389 | NA | other | upstream | 1655124 | 7160641 ~ 7161290 (+) |
| CI01000016_05405791_05407797 | AICDA | other | upstream | 3408551 | 5405791 ~ 5407963 (+) |
| G95792 | NA | other | upstream | 3590473 | 5219880 ~ 5225941 (+) |
| G98288 | NA | other | downstream | 179116 | 8996098 ~ 9002717 (+) |
| CI01000016_09796196_09842235 | NA | other | downstream | 978649 | 9795950 ~ 9842576 (+) |
| G99041 | NA | other | downstream | 1107436 | 9924418 ~ 9925654 (+) |
| G99410 | NA | other | downstream | 1417418 | 10234400 ~ 10236851 (+) |
| G99456 | NA | other | downstream | 1477409 | 10294391 ~ 10298904 (+) |
