Gene
RNA
| Item | Value |
|---|---|
| gene id | G98272 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 8889842 ~ 8894794 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU111806 | True | 4021 | lncRNA | 0.37 | 2 | 8889842 | 8894794 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_08817749_08824067 | NA | coding | upstream | 65764 | 8817749 ~ 8824078 (+) |
| CI01000016_08766170_08768621 | LAG3 | coding | upstream | 121064 | 8766170 ~ 8768778 (+) |
| CI01000016_08752386_08753821 | RPL18.L, RPL18.S, RPL18 | coding | upstream | 136021 | 8752386 ~ 8753821 (+) |
| CI01000016_08748359_08750572 | NA | coding | upstream | 139106 | 8748359 ~ 8750736 (+) |
| CI01000016_08696516_08734418 | MYH14 | coding | upstream | 155182 | 8696516 ~ 8734660 (+) |
| CI01000016_08916022_08916606 | NA | coding | downstream | 20234 | 8915028 ~ 8916667 (+) |
| CI01000016_09026732_09050431 | NA | coding | downstream | 131938 | 9026732 ~ 9050838 (+) |
| CI01000016_09138227_09156795 | NA | coding | downstream | 242640 | 9137434 ~ 9157472 (+) |
| CI01000016_09181426_09182326 | NA | coding | downstream | 286632 | 9181426 ~ 9182326 (+) |
| CI01000016_09183871_09184200 | TMEM238 | coding | downstream | 288582 | 9183376 ~ 9184427 (+) |
| G98326 | NA | non-coding | upstream | 42718 | 8845654 ~ 8847124 (+) |
| G98318 | NA | non-coding | upstream | 72860 | 8816414 ~ 8816982 (+) |
| G98317 | NA | non-coding | upstream | 73602 | 8815636 ~ 8816240 (+) |
| G98256 | NA | non-coding | upstream | 89161 | 8783613 ~ 8800681 (+) |
| G98321 | NA | non-coding | upstream | 108936 | 8780567 ~ 8780906 (+) |
| G98289 | NA | non-coding | downstream | 48423 | 8943217 ~ 8945455 (+) |
| G98356 | NA | non-coding | downstream | 83438 | 8978232 ~ 8978540 (+) |
| G98362 | NA | non-coding | downstream | 94444 | 8989238 ~ 8989461 (+) |
| G98375 | NA | non-coding | downstream | 190434 | 9085228 ~ 9098103 (+) |
| G98385 | NA | non-coding | downstream | 230925 | 9125719 ~ 9125931 (+) |
| G97824 | NA | other | upstream | 874067 | 8014363 ~ 8015775 (+) |
| CI01000016_07784248_07784757 | TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S | other | upstream | 1104119 | 7783987 ~ 7784996 (+) |
| G96389 | NA | other | upstream | 1728552 | 7160641 ~ 7161290 (+) |
| CI01000016_05405791_05407797 | AICDA | other | upstream | 3481979 | 5405791 ~ 5407963 (+) |
| G95792 | NA | other | upstream | 3663901 | 5219880 ~ 5225941 (+) |
| G98288 | NA | other | downstream | 101304 | 8996098 ~ 9002717 (+) |
| CI01000016_09796196_09842235 | NA | other | downstream | 900837 | 9795950 ~ 9842576 (+) |
| G99041 | NA | other | downstream | 1029624 | 9924418 ~ 9925654 (+) |
| G99410 | NA | other | downstream | 1339606 | 10234400 ~ 10236851 (+) |
| G99456 | NA | other | downstream | 1399597 | 10294391 ~ 10298904 (+) |
