Gene
RNA
| Item | Value |
|---|---|
| gene id | G98675 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 9105394 ~ 9107226 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: basic salivary proline-rich protein 1-like, partial |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU112292 | True | 1833 | lncRNA | 0.34 | 1 | 9105394 | 9107226 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_09060801_09086358 | CLCN1B | coding | downstream | 17195 | 9060522 ~ 9088199 (-) |
| CI01000016_08947581_08961131 | ZYX | coding | downstream | 144263 | 8946148 ~ 8961131 (-) |
| CI01000016_08926089_08945071 | NA | coding | downstream | 160323 | 8925960 ~ 8945229 (-) |
| CI01000016_08920718_08923668 | EMG1 | coding | downstream | 181346 | 8920465 ~ 8924048 (-) |
| CI01000016_08906943_08914821 | NOP2 | coding | downstream | 190454 | 8906612 ~ 8914940 (-) |
| CI01000016_09107780_09122244 | CASP2 | coding | upstream | 183 | 9107409 ~ 9122290 (-) |
| CI01000016_09129190_09132103 | NA | coding | upstream | 20382 | 9127608 ~ 9132103 (-) |
| CI01000016_09164404_09171973 | CCDC106A, CCDC106 | coding | upstream | 57178 | 9164404 ~ 9174758 (-) |
| CI01000016_09185530_09205841 | NA | coding | upstream | 78178 | 9185404 ~ 9206034 (-) |
| CI01000016_09212039_09212358 | NA | coding | upstream | 104771 | 9211997 ~ 9213170 (-) |
| G98778 | NA | non-coding | downstream | 1936 | 9103223 ~ 9103458 (-) |
| G98776 | NA | non-coding | downstream | 3581 | 9101601 ~ 9101813 (-) |
| G98694 | NA | non-coding | downstream | 47276 | 9057812 ~ 9058118 (-) |
| G98658 | NA | non-coding | downstream | 179626 | 8924510 ~ 8925768 (-) |
| G98672 | NA | non-coding | downstream | 188721 | 8915922 ~ 8916673 (-) |
| G98666 | NA | non-coding | upstream | 49443 | 9156669 ~ 9158272 (-) |
| G98783 | NA | non-coding | upstream | 67956 | 9175182 ~ 9175917 (-) |
| G98683 | NA | non-coding | upstream | 126678 | 9233904 ~ 9234433 (-) |
| G98692 | NA | non-coding | upstream | 147725 | 9254951 ~ 9255328 (-) |
| G98789 | NA | non-coding | upstream | 148409 | 9255635 ~ 9255882 (-) |
| CI01000016_08893013_08893496 | NPPCL, ANFC1 | other | downstream | 210657 | 8888833 ~ 8894737 (-) |
| G97341 | NA | other | downstream | 2945673 | 6158986 ~ 6159721 (-) |
| CI01000016_05412782_05415867 | NA | other | downstream | 3687177 | 5412248 ~ 5415906 (-) |
| CI01000016_05325805_05330265 | COX6B2 | other | downstream | 3774548 | 5325519 ~ 5332874 (-) |
| G98679 | NA | other | upstream | 127770 | 9234996 ~ 9239929 (-) |
| G98691 | NA | other | upstream | 148876 | 9256102 ~ 9257611 (-) |
| CI01000016_09510177_09512196 | ID4 | other | upstream | 402396 | 9509622 ~ 9512428 (-) |
| G99178 | NA | other | upstream | 707135 | 9814361 ~ 9814955 (-) |
| G100190 | NA | other | upstream | 943942 | 10051168 ~ 10052389 (-) |
