G98783


Basic Information

Item Value
gene id G98783
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9175182 ~ 9175917 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU112408
AAAAAAACTGTAAACACATTTACAGAACAAACTGTCAATTTTACAGTATAAAACTGTAATTTACAAACATACAAACAGAAAATTTGAATGTAAACAAGTAAATTCAACAATGCACACTACTAGTAAAATCTGTTTTGTACCTTTAACATATACTGACAACCACCATAATAATGCAGGTGGTAAAAGAGAAAGCCACATGAAGAATCAGAGTTCATCACAAATAGCTTTTCCACTGGCTGAAGTATATACTAATGTAAAGAGGGTGCAAAGAGTCATTCACGCAAACGCAAAACACCATCATGGTAACCCACAACACTTACATAATGCAATAAACATTCATTAAACAACAGAAGATGTAACATAAAACCCTAATGTACATAACTGATAACAAAAACTATTAAGAAACATGATTTTTTAAACAAAATACTTTCAAATGTGGAGTGTCACACAGGGAATTGTGGGAATATCAGTTTACAGTTTTTGACTGTAAATTATACATTGATTTGTTCTTTTTTACTTCTAAAAATTGTAATATTTACAGCATTTTACTGTGAAAATTACATAAAATGTCTGGTAAGAGCTTTTACAGTTTTTCCCTGTATATAGTACTGGAACTTACTGTTAACCTATTTACATTTTTTTTCCGTAACGTTTTTACAATATTTTACTGTTAAAATCACATTCATTTTTTACAGTGT
>TU112403
AGCTGTGGTTGCCAGAATAATTTTGTAAAAAAATACAGAAAAAAACTGTAAACACATTTACAGAACAAACTGTCAATTTTACAGTATAAAACTGTAATTTACAAACATACAAACAGAAAATTTGAATGTAAACAAGTAAATTCAACAATGCACACTACTAGTAAAATCTGTTTTGTACCTTTAACATATACTGACAACCACCATAATAATGCAGGTGGTAAAAGAGAAAGCCACATGAAGAATCAGAGTTCATCACAAATAGCTTTTCCACTGGCTGAAGTATATACTAATGTAAAGAGGGTGCAAAGAGTCATTCACGCAAACGCAAAACACCATCATGGTAACCCACAACACTTACATAATGCAATAAACATTCATTAAACAACAGAAGATGTAACATAAAACCCTAATGTACATAACTGATAACAAAAACTATTAAGAAACATGATTTTTTAAACAAAATACTTTCAAATGTGGAGTGTCACAC
>TU112405
AAAAAAACTGTAAACACATTTACAGAACAAACTGTCAATTTTACAGTATAAAACTGTAATTTACAAACATACAAACAGAAAATTTGAATGTAAACAAGTAAATTCAACAATGCACACTACTAGTAAAATCTGTTTTGTACCTTTAACATATACTGACAACCACCATAATAATGCAGGTGGTAAAAGAGAAAGCCACATGAAGAATCAGAGTTCATCACAAATAGCTTTTCCACTGGCTGAAGTATATACTAATGTAAAGAGGGTGCAAAGAGTCATTCACGCAAACGCAAAACACCATCATGGTAACCCACAACACTTACATAATGCAATAAACATTCATTAAACAACAGAAGATGTAACATAAAACCCTAATGTACATAACTGATAACAAAAACTATTAAGAAACATGATTTTTTAAACAAAATACTTTCAAATGTGGAGTGTCACAC
>TU112404
AGCTGTGGTTGCCAGAATAATTTTGTAAAAAAATACAGAAAAAAACTGTAAACACATTTACAGAACAAACTGTCAATTTTACAGTATAAAACTGTAATTTACAAACATACAAACAGAAAATTTGAATGTAAACAAGTAAATTCAACAATGCACACTACTAGTAAAATCTGTTTTGTACCTTTAACATATACTGACAACCACCATAATAATGCAGGTGGTAAAAGAGAAAGCCACATGAAGAATCAGAGTTCATCACAAATAGCTTTTCCACTGGCTGAAGTATATACTAATGTAAAGAGGGTGCAAAGAGTCATTCACGCAAACGCAAAACACCATCATGGTAACCCACAACACTTACATAATGCAATAAACATTCATTAAA
>TU112406
AAAAAAACTGTAAACACATTTACAGAACAAACTGTCAATTTTACAGTATAAAACTGTAATTTACAAACATACAAACAGAAAATTTGAATGTAAACAAGTAAATTCAACAATGCACACTACTAGTAAAATCTGTTTTGTACCTTTAACATATACTGACAACCACCATAATAATGCAGGTGGTAAAAGAGAAAGCCACATGAAGAATCAGAGTTCATCACAAATAGCTTTTCCACTGGCTGAAGTATATACTAATGTAAAGAGGGTGCAAAGAGTCATTCACGCAAACGCAAAACACCATCATGGTAACCCACAACACTTACATAATGCAATAAACATTCATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112408 False 698 lncRNA 0.29 1 9175182 9175879
TU112403 False 487 lncRNA 0.31 1 9175431 9175917
TU112405 False 449 lncRNA 0.31 1 9175431 9175879
TU112404 False 382 lncRNA 0.32 1 9175536 9175917
TU112406 True 344 lncRNA 0.32 1 9175536 9175879

Neighbor

gene id symbol gene type direction distance location
CI01000016_09164404_09171973 CCDC106A, CCDC106 coding downstream 424 9164404 ~ 9174758 (-)
CI01000016_09129190_09132103 NA coding downstream 43079 9127608 ~ 9132103 (-)
CI01000016_09107780_09122244 CASP2 coding downstream 52892 9107409 ~ 9122290 (-)
CI01000016_09060801_09086358 CLCN1B coding downstream 86983 9060522 ~ 9088199 (-)
CI01000016_08947581_08961131 ZYX coding downstream 214051 8946148 ~ 8961131 (-)
CI01000016_09185530_09205841 NA coding upstream 9487 9185404 ~ 9206034 (-)
CI01000016_09212039_09212358 NA coding upstream 36080 9211997 ~ 9213170 (-)
CI01000016_09224593_09226660 NA coding upstream 48550 9224467 ~ 9226660 (-)
CI01000016_09251602_09253351 NA coding upstream 75495 9251412 ~ 9253351 (-)
CI01000016_09376209_09382250 TAPBPL coding upstream 200292 9376209 ~ 9382250 (-)
G98666 NA non-coding downstream 16910 9156669 ~ 9158272 (-)
G98675 NA non-coding downstream 67956 9105394 ~ 9107226 (-)
G98778 NA non-coding downstream 71724 9103223 ~ 9103458 (-)
G98776 NA non-coding downstream 73369 9101601 ~ 9101813 (-)
G98694 NA non-coding downstream 117064 9057812 ~ 9058118 (-)
G98683 NA non-coding upstream 57987 9233904 ~ 9234433 (-)
G98692 NA non-coding upstream 79034 9254951 ~ 9255328 (-)
G98789 NA non-coding upstream 79718 9255635 ~ 9255882 (-)
G98831 NA non-coding upstream 135074 9310991 ~ 9311210 (-)
G98834 NA non-coding upstream 137658 9313575 ~ 9314005 (-)
CI01000016_08926089_08945071 NA other downstream 229953 8925960 ~ 8945229 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other downstream 280445 8888833 ~ 8894737 (-)
G97341 NA other downstream 3015461 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 3756965 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 3844336 5325519 ~ 5332874 (-)
G98679 NA other upstream 59079 9234996 ~ 9239929 (-)
G98691 NA other upstream 80185 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 333705 9509622 ~ 9512428 (-)
G99178 NA other upstream 638444 9814361 ~ 9814955 (-)
G100190 NA other upstream 875251 10051168 ~ 10052389 (-)

Expression


Co-expression Network