G98290


Basic Information

Item Value
gene id G98290
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9326374 ~ 9375553 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU111824
TATTTTTTTTTTTTTCTCGGTTTCTGTTTTTATTTAACAAAACAAGGAAAATGTACAACAAATAAACAACATCCAATAGATCAGAACATCGGAAGAAAAACAGTGGAATTAATTTTATGTTTATAGAATAAATTACGCAGGAAACCTTTTTTGACATTTAACTTCTATTAAACAAATGTACCACAAATAAATCCACTGAAAGACAGTTGAATCAAACAAGCTAAAATGGCTCCTTCCCAAGATTTCACTCAGAAGACAGGTCCTCAGTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU111824 True 270 lncRNA 0.30 2 9326374 9375553

Neighbor

gene id symbol gene type direction distance location
CI01000016_09299769_09306497 RORC coding upstream 18989 9299769 ~ 9307385 (+)
CI01000016_09266373_09278553 NA coding upstream 47243 9265565 ~ 9279131 (+)
CI01000016_09259876_09260073 NA coding upstream 66173 9259641 ~ 9260201 (+)
CI01000016_09240403_09243601 NA coding upstream 82773 9239745 ~ 9243601 (+)
CI01000016_09228083_09231481 NA coding upstream 94739 9228083 ~ 9231635 (+)
CI01000016_09524279_09527107 NA coding downstream 148064 9523617 ~ 9527207 (+)
CI01000016_09615039_09616082 NA coding downstream 237238 9612791 ~ 9617419 (+)
CI01000016_09663511_09664293 NA coding downstream 287958 9663511 ~ 9664495 (+)
CI01000016_09664848_09674309 CEP192, SEH1L coding downstream 289295 9664848 ~ 9674728 (+)
CI01000016_09686132_09706397 CEP192 coding downstream 310579 9686132 ~ 9706453 (+)
G98280 NA non-coding upstream 99466 9224449 ~ 9226908 (+)
G98392 NA non-coding upstream 114608 9211350 ~ 9211766 (+)
G98391 NA non-coding upstream 150414 9175199 ~ 9175960 (+)
G98385 NA non-coding upstream 200443 9125719 ~ 9125931 (+)
G98375 NA non-coding upstream 228271 9085228 ~ 9098103 (+)
G98271 NA non-coding downstream 664 9376217 ~ 9378050 (+)
G98409 NA non-coding downstream 24402 9399955 ~ 9402046 (+)
G98414 NA non-coding downstream 28314 9403867 ~ 9404218 (+)
G98415 NA non-coding downstream 28814 9404367 ~ 9404679 (+)
G98416 NA non-coding downstream 29465 9405018 ~ 9405471 (+)
G98288 NA other upstream 323657 8996098 ~ 9002717 (+)
G97824 NA other upstream 1310599 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 1540651 7783987 ~ 7784996 (+)
G96389 NA other upstream 2165084 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 3918511 5405791 ~ 5407963 (+)
CI01000016_09796196_09842235 NA other downstream 420078 9795950 ~ 9842576 (+)
G99041 NA other downstream 548865 9924418 ~ 9925654 (+)
G99410 NA other downstream 858847 10234400 ~ 10236851 (+)
G99456 NA other downstream 918838 10294391 ~ 10298904 (+)
G99940 NA other downstream 2296092 11671645 ~ 11672873 (+)

Expression


Co-expression Network