G98442


Basic Information

Item Value
gene id G98442
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9473175 ~ 9473571 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU112001
CAAATACATCTCTTGATTTTAATAATGTATTAGTAAATGTTGAAATTAACATTAACAAAGATTAATAAATGCTGTAAAAGTGCAGTTCATTATTAGTTCATATTAACTAATGTAGTTAACTAATTAACCTTATTGTAAAGTGTTACCAAAATAACAATAGGGCTTTTCACACTTGAAATAGTTAACCCTGGGCCATTCTAAACCCCGGGTAAACGGGTTATCATGCTTCACGTTTCACACTGCTCATAATTTTAATCCTGGGTATTCATAAGCTTTCGTTTCACATTGTACATTCCTAAACCCTGGGTTACCGTTTGCATATTTGCGGTGTTAGTGTCATTGATTGGATAAACGCACCACGTGATTTGTTTACATAGCTTTAGCATTGCGCATCCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112001 True 397 lncRNA 0.34 1 9473175 9473571

Neighbor

gene id symbol gene type direction distance location
CI01000016_09364728_09366356 VAMP1 coding upstream 106819 9364649 ~ 9366356 (+)
CI01000016_09363759_09363932 NA coding upstream 108802 9363759 ~ 9364373 (+)
CI01000016_09357617_09361063 PSMD4B, PSMD4, PSMD4A coding upstream 112112 9357617 ~ 9361063 (+)
CI01000016_09340494_09349036 PIP5K1A, PIP5K1AB coding upstream 124139 9340494 ~ 9349036 (+)
CI01000016_09317824_09332379 NA coding upstream 140461 9317722 ~ 9332714 (+)
CI01000016_09524279_09527107 NA coding downstream 50046 9523617 ~ 9527207 (+)
CI01000016_09615039_09616082 NA coding downstream 139220 9612791 ~ 9617419 (+)
CI01000016_09663511_09664293 NA coding downstream 189940 9663511 ~ 9664495 (+)
CI01000016_09664848_09674309 CEP192, SEH1L coding downstream 191277 9664848 ~ 9674728 (+)
CI01000016_09686132_09706397 CEP192 coding downstream 212561 9686132 ~ 9706453 (+)
G98416 NA non-coding upstream 67704 9405018 ~ 9405471 (+)
G98415 NA non-coding upstream 68496 9404367 ~ 9404679 (+)
G98414 NA non-coding upstream 68957 9403867 ~ 9404218 (+)
G98409 NA non-coding upstream 71129 9399955 ~ 9402046 (+)
G98271 NA non-coding upstream 95125 9376217 ~ 9378050 (+)
G98451 NA non-coding downstream 17754 9491325 ~ 9491638 (+)
G98454 NA non-coding downstream 25679 9499250 ~ 9499485 (+)
G98460 NA non-coding downstream 35039 9508610 ~ 9508812 (+)
G98462 NA non-coding downstream 43089 9516660 ~ 9517267 (+)
G98464 NA non-coding downstream 45770 9519341 ~ 9519614 (+)
G98288 NA other upstream 470458 8996098 ~ 9002717 (+)
G97824 NA other upstream 1457400 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 1687452 7783987 ~ 7784996 (+)
G96389 NA other upstream 2311885 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 4065312 5405791 ~ 5407963 (+)
CI01000016_09796196_09842235 NA other downstream 322060 9795950 ~ 9842576 (+)
G99041 NA other downstream 450847 9924418 ~ 9925654 (+)
G99410 NA other downstream 760829 10234400 ~ 10236851 (+)
G99456 NA other downstream 820820 10294391 ~ 10298904 (+)
G99940 NA other downstream 2198074 11671645 ~ 11672873 (+)

Expression


Co-expression Network