G98462


Basic Information

Item Value
gene id G98462
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9516660 ~ 9517267 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU112026
AGACTTTGCAAACAGACTTTTATGATATGGGCCCGACAGTAATGCAACAACATGTAAGTAACTGTGTTAATTCTAATGCCTGATCTGATATGTAATGATTCATGCAGTCAGATGTTCTTTGTCTATGTGTCAGTAAATCAAACCAGTGACTAAACGGTCAACTTCACGTTGTTTCTCTTAGTAGGATGAAAATATTCTGTTATTTAAACTGTGATTAAATTATATAAAGAAAGCGATCAAAGAACGCTCCCTTTGCAATCGTTGGAGATCGAATTAAAGATCTTTTTAATGAAATCTGAGAGCTTTCTGTCCCTCCATTGACAGCCTATGCAACTACCTCCAATGCGCGTTCATGAGAACATCATGAAGCATGCATGCTGTGTTTTTTTTGCACAAACAAAGCACACACATCACTTCATAAAAATGAGGTTAAACCACTGGAGTCACATGGATTACTTTTACTACACTTTACTACCTTTCTGGGGCTTGAAAGTGGTAGTTGCGTAGCTGGGAGAAAGAGAAATCTCTCAGATTTCCTCCAAAATATCTTAATTTGTGTTCCGAAGATGAATGAAGGTCTTATAGGTTTGGAATGACATGAGGGTGAG

Function

NR:

description
PREDICTED: protocadherin gamma-A11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112026 True 608 lncRNA 0.38 1 9516660 9517267

Neighbor

gene id symbol gene type direction distance location
CI01000016_09364728_09366356 VAMP1 coding upstream 150304 9364649 ~ 9366356 (+)
CI01000016_09363759_09363932 NA coding upstream 152287 9363759 ~ 9364373 (+)
CI01000016_09357617_09361063 PSMD4B, PSMD4, PSMD4A coding upstream 155597 9357617 ~ 9361063 (+)
CI01000016_09340494_09349036 PIP5K1A, PIP5K1AB coding upstream 167624 9340494 ~ 9349036 (+)
CI01000016_09317824_09332379 NA coding upstream 183946 9317722 ~ 9332714 (+)
CI01000016_09524279_09527107 NA coding downstream 6350 9523617 ~ 9527207 (+)
CI01000016_09615039_09616082 NA coding downstream 95524 9612791 ~ 9617419 (+)
CI01000016_09663511_09664293 NA coding downstream 146244 9663511 ~ 9664495 (+)
CI01000016_09664848_09674309 CEP192, SEH1L coding downstream 147581 9664848 ~ 9674728 (+)
CI01000016_09686132_09706397 CEP192 coding downstream 168865 9686132 ~ 9706453 (+)
G98460 NA non-coding upstream 7848 9508610 ~ 9508812 (+)
G98454 NA non-coding upstream 17175 9499250 ~ 9499485 (+)
G98451 NA non-coding upstream 25022 9491325 ~ 9491638 (+)
G98442 NA non-coding upstream 43089 9473175 ~ 9473571 (+)
G98416 NA non-coding upstream 111189 9405018 ~ 9405471 (+)
G98464 NA non-coding downstream 2074 9519341 ~ 9519614 (+)
G98463 NA non-coding downstream 2590 9519857 ~ 9520171 (+)
G98913 NA non-coding downstream 17114 9534381 ~ 9534733 (+)
G98925 NA non-coding downstream 34139 9551406 ~ 9551843 (+)
G98926 NA non-coding downstream 34784 9552051 ~ 9552499 (+)
G98288 NA other upstream 513943 8996098 ~ 9002717 (+)
G97824 NA other upstream 1500885 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 1730937 7783987 ~ 7784996 (+)
G96389 NA other upstream 2355370 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 4108797 5405791 ~ 5407963 (+)
CI01000016_09796196_09842235 NA other downstream 278364 9795950 ~ 9842576 (+)
G99041 NA other downstream 407151 9924418 ~ 9925654 (+)
G99410 NA other downstream 717133 10234400 ~ 10236851 (+)
G99456 NA other downstream 777124 10294391 ~ 10298904 (+)
G99940 NA other downstream 2154378 11671645 ~ 11672873 (+)

Expression


Co-expression Network