XLOC_000008 (f7i)


Basic Information

Item Value
gene id XLOC_000008
gene name f7i
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 127250 ~ 134079 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000020
ATTCAGACAGAATCATGAGGGTTGGAGCCGCTGCGGTGCTGCTGTGTGTGCTGACACTCCGCTCGACCAGCGCCGTGTTTCTCAGTAAAGATGAGGCCAGTGCGCTTCTCCAGCGCTTCAGACGCGCAAACTCCGGCTTTCTGGAGGAGATGAAGGCTGGAAACCTGGAGCGCGAGTGTGTGGAGGAGATCTGCGACTATGAGGAGGCGCGCGAGGTGTTCGAGGACGACGACAGGAcgAAACAGTTCTGGTTGAGTTACTCCAACAAGGAGCCCTGCTTGACCAACCCGTGCAGGAACAACGGCACCTGCGTCTATCTGGCCGACAGCTACTACTGCCTGTGCTCTGAGGGCTACGAGGGCAAATACTGCGAAAAAGGCCTCGAGGAGACGCTGAAGTGTCAGTATGTGAACGGAGGCTGTGAGCAGTTCTGTGACGGCTCCGGGGCCCGCCGCTCATGCAGCTGTGCGGAGGGATACGCTCTGGCGGATGACGGGACGTCCTGCGTCTCTCAGGTTGATTATCCGTGTGGAAAGATTCCTGTGCAGAAAAACACTTCTCAGAATCAGTTCCTGGGTGGAATTCACTGTCCCAGAGGTCACTGTCCATGGCAGGTGCTGATCGACTATAATGGCGAGAGTGTGTGCGGGGGGGCTCTGCTGGAGGGACCCTGGCTGATCACTGCGGCCCACTGCGTTCATCAGAAGGACACCAGGTTCCTCAAGGCCGTCACGGGTGAGCATGACCTGGATGTTCTGGACGGTTCAGAGGAGCCGTATGAAGTGTCTGCTGTCTTCATACATCCGAATTATGACCCTGAGACTCTGGACAGCGATCTGGCCCTCCTCCGGCTCCGTGTGCCCGTGCAGAGATCCTTATACGCCGTGCCCATCTGTCTGCCCACCCCGCAGCTGGCACGCAGTGAGCTCTGGGCTGCCCGCTTCCACACGCTCAGCGGATGGGGCACTCGCACCGCAGGACACAATCTCCGGCGGGAAAAGGGTCTTAAAGGGCCGGCGTCCGGGACCCTGCAGCGGCTGGCAGTCCCTCTGCTGCCCGCCGCGCAGTGTGGCAACGCTAACACCACTGCTAACATGTTCTGTGCGGGCTACACCGAGGGCGACCACGCGTCCTGCAGAGGCCATGACGGCAGCCCTCTGGTCACCCGCTATGGGGAAACATCCTTCCTCACCGGTGTGGTGTCCTGGGGCAGAGGCTGCGGGCCGCCCGGATACTACTGGATCTACACTAAAGTGGAGAACTTCCTGATCTGGATGGACACGGTTATGAAGACAAACACTGAAGATAAGAGCGAGCAGATTGCTAATGTCTCCACTAAAAATTGATGATTTAGtcctaaaacagattaaaatggcTGTGATTTCTGTGATGAGGTTTGCTTTAAGAAGGAAAATATGAGTTATGTGGAAGTAAAGAGCCCTCAAACTCTTTACTTCCACCCTCATTCTGGATGgataaatgcatatataaatataattaataaacatataaatcTTAGTATCATATTATGAAAACAGACACTGATCATAAGCGTCTTCCTAAAGGTTAATTAATCTTCTGATGATGTGGCCAGAAAACAAAGATTAAAACGgtcatgtctgtctgtctttgtgaTTCGGTTTGCTTTGCTCGTGATGAACGCATCAGTGCTGATTTGTAGTGAAATAAATccctctgagtg
>TCONS_00000021
GAGGGTTGGAGCCGCTGCGGTGCTGCTGTGTGTGCTGACACTCCGCTCGACCAGCGCCGTGTTTCTCAGTAAAGATGAGGCCAGTGCGCTTCTCCAGCGCTTCAGACGCGCAAACTCCGGCTTTCTGGAGGAGATGAAGGCTGGAAACCTGGAGCGCGAGTGTGTGGAGGAGATCTGCGACTATGAGGAGGCGCGCGAGGTGTTCGAGGACGACGACAGGAcgAAACAGTTCTGGTTGAGTTACTCCAGTGAGTTCTGTCCGAGCGCACGTGACCCGTTACCATGGCAACCGTAGTTTCCTACATAAATCTGAGGGAGATTAAAACACTACAGACAAGGAGCCCTGCTTGACCAACCCGTGCAGGAACAACGGCACCTGCGTCTATCTGGCCGACAGCTACTACTGCCTGTGCTCTGAGGGCTACGAGGGCAAATACTGCGAAAAAGGCCTCGAGGAGACGCTGAAGTGTCAGTATGTGAACGGAGGCTGTGAGCAGTTCTGTGACGGCTCCGGGGCCCGCCGCTCATGCAGCTGTGCGGAGGGATACGCTCTGGCGGATGACGGGACGTCCTGCGTCTCTCAGGTTGATTATCCGTGTGGAAAGATTCCTGTGCAGAAAAACACTTCTCAGAATCAGTTCCTGGGTGGAATTCACTGTCCCAGAGGTCACTGTCCATGGCAGGTGCTGATCGACTATAATGGCGAGAGTGTGTGCGGGGGGGCTCTGCTGGAGGGACCCTGGCTGATCACTGCGGCCCACTGCGTTCATCAGAAGGACACCAGGTTCCTCAAGGCCGTCACGGGTGAGCATGACCTGGATGTTCTGGACGGTTCAGAGGAGCCGTATGAAGTGTCTGCTGTCTTCATACATCCGAATTATGACCCTGAGACTCTGGACAGCGATCT
>TCONS_00000022
CTGACACTCCGCTCGACCAGCGCCGTGTTTCTCAGTAAAGATGAGGCCAGTGCGCTTCTCCAGCGCTTCAGACGCGCAAACTCCGGCTTTCTGGAGGAGATGAAGGCTGGAAACCTGGAGCGCGAGTGTGTGGAGGAGATCTGCGACTATGAGGAGGCGCGCGAGGTGTTCGAGGACGACGACAGGAcgAAACAGTTCTGGTTGAGTTACTCCAGTGAGTTCTGTCCGAGCGCACGTGACCCGTTACCATGGCAACCGTAGTTTCCTACATAAATCTGAGGGAGATTAAAACACTACAGGTCTAATGGCTAAATGCATGAAGAAAGTGACGTATAAGTGCacacgcagaattctgcagatttttagcccatcattgatcatctgtttatttacttgagtaaatgtgtgtaaatctatatttattcagtttttaaattaatttcagtaatattatagatgaatatgaaaatgttcctatagtttatttacaatacagcttTATATAATACAGCATGTTATATAGAAGACTTGTTTACCAAAGTAAGAGTTTACCAAATCAAGTGGAcaactggatttgcattgtaaacattaaatacaagttaaaaaggtaacAAGATTATTATTCttaagattattctgcttgtgttcattaaaaactcatttcattttgaatcattatttctgaaaaaaagacaatttacactgcaa
>TCONS_00000023
cattcctctgttgaacacagcaGAAGATATTCAGAAGAACATTGCAAAGCAGtagccatcgacttccatagtacatttatttttcctgctatggatgtcGAGGTTTAGCAGTTgccaattaacaaaacaaaaaatataatgaaGACTTGAAGACATTTTGATTGTTCTGTAaatcattcttcagaatatcttgggTGGAACAGCTGAATATACATTTGTGAGTGAACTGTCCTCTTAAATGAAATGTTCtgattgtttttgtgtgtaaaaGACAAGGAGCCCTGCTTGACCAACCCGTGCAGGAACAACGGCACCTGCGTCTATCTGGCCGACAGCTACTACTGCCTGTGCTCTGAGGGCTACGAGGGCAAATACTGCGAAAAAGGCCTCGAGGAGACGCTGAAGTGTCAGTATGTGAACGGAGGCTG

Function

symbol description
f7i Predicted to enable calcium ion binding activity and serine-type endopeptidase activity. Acts upstream of or within negative regulation of blood coagulation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in liver.

GO:

id name namespace
GO:0030195 negative regulation of blood coagulation biological_process
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-021206-10 Predicted to enable calcium ion binding activity and serine-type endopeptidase activity. Acts upstream of or within negative regulation of blood coagulation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in liver.

Ensembl:

ensembl_id ENSDARG00000075827

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000020 False 1702 mRNA 0.54 8 127250 134079
TCONS_00000021 False 907 lncRNA 0.57 8 127266 133215
TCONS_00000022 False 708 lncRNA 0.39 3 127300 129591
TCONS_00000023 True 428 lncRNA 0.43 2 130627 131221

Neighbor

gene id symbol gene type direction distance location
XLOC_000007 f7 coding upstream 2004 119960 ~ 125246 (+)
XLOC_000006 f7l coding upstream 8104 109798 ~ 119146 (+)
XLOC_000005 hikeshi coding upstream 88059 36552 ~ 39191 (+)
XLOC_000004 eed coding upstream 92920 27690 ~ 34330 (+)
XLOC_000003 CU651657.1 coding upstream 99995 25585 ~ 27255 (+)
XLOC_000009 f10 coding downstream 1824 135903 ~ 142469 (+)
XLOC_000010 prozb coding downstream 10205 144284 ~ 151998 (+)
XLOC_000011 NA coding downstream 22713 156792 ~ 157282 (+)
XLOC_000012 cul4a coding downstream 23714 157793 ~ 167398 (+)
XLOC_000013 lamp1a coding downstream 42504 176583 ~ 182258 (+)
XLOC_000018 NA non-coding downstream 221402 355481 ~ 358562 (+)
XLOC_000024 dre-mir-155 non-coding downstream 442365 576444 ~ 576521 (+)
XLOC_000026 NA non-coding downstream 660897 794976 ~ 911551 (+)
XLOC_000028 NA non-coding downstream 881733 1015812 ~ 1033638 (+)

Expression


Co-expression Network