G99056


Basic Information

Item Value
gene id G99056
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9899553 ~ 9900079 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU112706
GATAACATATCAAATGTTGAAATATCAGATATCAATATCAGAAAGGAGTTTCTCAGAGAAAAATTGCAAAGAGTTTGAAGTTATCAATCATCTACAGTGCATAATATCATCCAAAGATTCAGAGAATCTGGAACAATCTCTGTGCGTAAGGGTCAAGGCCGGAAAACCATACTGGATGCCCGTGATCTTCGGGCCCTTAGATGGCACTGCATCACATACAGGAATGCTACTGTAATGGAAATCACAACATGGGCTCAGGAATACTTCCAGAAAACATAGTCGGTGAACACAATCCACCGTGCCATTCGCTGTTGCCGGCTAAAACTCTATAGGTCAAAAAAGAAGCCATATCTAAACATGATCCAGAAGCGCAGGCGTTTTCTTTGGGCCAAGGCTCATTTAAAATGGACTGTGGCAAAGTGGAAAACTGTTCTGTGGTCAGACGAATCAAAATTTGAAGTTCTTTTTGGAAAACTGGGATGCCATGTCATCCGGACTAAAGAGGACAAGGACAACCCAAGTTGTTA
>TU112705
AATATCATCCAAAGATTCAGAGAATCTGGAACAATCTCTGTGCGTAAGGGTCAAGGCCGGAAAACCATACTGGATGCCCGTGATCTTCGGGCCCTTAGATGGCACTGCATCACATACAGGAATGCTACTGTAATGGAAATCACAACATGGGCTCAGGAATACTTCCAGAAAACATAGTCGGTGAACACAATCCACCGTGCCATTCGCTGTTGCCGGCTAAAACTCTATAGGTCAAAAAAGAAGCCATATCTAAACATGATCCAGAAGCGCAGGCGTTTTCTTTGGGCCAAGGCTCATTTAAAATGGACTGTGGCAAAGTGGAAAACTGTTCTGTGGTCAGACGAATCAAAATTTGAAGTTCTTTTTGGAAAACTGGGATGCCATGTCATCCGGACTAAAGAGGACAAGGACAACCCAAGTTGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112706 False 527 lncRNA 0.42 1 9899553 9900079
TU112705 True 425 lncRNA 0.44 1 9899655 9900079

Neighbor

gene id symbol gene type direction distance location
CI01000016_09868120_09886212 NA coding upstream 13320 9868076 ~ 9886233 (+)
CI01000016_09796196_09842235 NA coding upstream 56977 9795950 ~ 9842576 (+)
CI01000016_09788926_09791625 SDC2 coding upstream 107630 9788926 ~ 9791923 (+)
CI01000016_09748780_09759954 MRS2 coding upstream 139170 9748780 ~ 9760383 (+)
CI01000016_09731997_09734823 NA coding upstream 164730 9731997 ~ 9734823 (+)
CI01000016_09934128_09954587 NA coding downstream 34049 9934128 ~ 9955328 (+)
CI01000016_09970010_09999304 NA coding downstream 69836 9969915 ~ 10000721 (+)
CI01000016_10042324_10051398 CTNNB1.L, CTNNB1 coding downstream 141937 10042016 ~ 10052367 (+)
CI01000016_10333877_10334229 NA coding downstream 433798 10333877 ~ 10334346 (+)
CI01000016_10339126_10370881 TRAK1 coding downstream 435179 10335258 ~ 10372651 (+)
G99040 NA non-coding upstream 35330 9864003 ~ 9864223 (+)
G99034 NA non-coding upstream 42705 9856512 ~ 9856848 (+)
G99024 NA non-coding upstream 112990 9785610 ~ 9786563 (+)
G99023 NA non-coding upstream 126329 9769865 ~ 9773224 (+)
G99022 NA non-coding upstream 129829 9765978 ~ 9769724 (+)
G99062 NA non-coding downstream 20188 9920267 ~ 9920479 (+)
G99063 NA non-coding downstream 21102 9921181 ~ 9940824 (+)
G99281 NA non-coding downstream 168165 10068244 ~ 10068606 (+)
G99283 NA non-coding downstream 169826 10069905 ~ 10070116 (+)
G98288 NA other upstream 896836 8996098 ~ 9002717 (+)
G97824 NA other upstream 1883778 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 2113830 7783987 ~ 7784996 (+)
G96389 NA other upstream 2738263 7160641 ~ 7161290 (+)
G99041 NA other downstream 24339 9924418 ~ 9925654 (+)
G99410 NA other downstream 334321 10234400 ~ 10236851 (+)
G99456 NA other downstream 394312 10294391 ~ 10298904 (+)
G99940 NA other downstream 1771566 11671645 ~ 11672873 (+)
G100178 NA other downstream 2260562 12160641 ~ 12162845 (+)

Expression


Co-expression Network