G100324


Basic Information

Item Value
gene id G100324
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10333883 ~ 10352130 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU114153
GGAGGTAAGTTGGGAGCGTGAAAGACGAGTCATTTCTGCGAATAGGTGTGGTAGAAGCAGACTCTCCATCACTCTCTTCAGCTGCACTTGTGTAGAACTGCAGAAGTTCATCCTTCATTGAGAGATCATGACGCAGCTGAGACACCTCTTCTCGTATGTGCTCCACCTGTTCTTCCAGGAAGGTGTTCCTCTCACTGAGGGTTTTGTTCTTTTTCAGCAGAGACTGGCCAATACGTGCTGCCAACTCCAAATCCCGCTCTTTCTCCTCCAGGAGACGTGTCACAGCATCTATGTCATTATATGTCTTAGTCATCTGGCCCACTCGATCAGCACATAGAAGGAAATATTTGAGGGTCTCCTCGATCTGTTCTGTGGTCAGGTCGAGGTTGACGTCGGGTGAGATGAGAGGCGTGTGGAGCCAGTCGTCGTGGTCATAGCCGTATATTGTGTCAGCTCTCAGCTTATAATGAGGCAACTGCTCCTCAAGCAAACTGATGATTTCCACCTCAGGAAGATCAGTGCTGTTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU114153 True 528 lncRNA 0.49 5 10333883 10352130

Neighbor

gene id symbol gene type direction distance location
CI01000016_10228314_10299064 ULK4 coding downstream 34819 10228314 ~ 10299064 (-)
CI01000016_10089136_10135299 NA coding downstream 198584 10088716 ~ 10135299 (-)
CI01000016_10025722_10027148 NA coding downstream 306624 10025502 ~ 10027259 (-)
CI01000016_09959197_09962175 NA coding downstream 370698 9957922 ~ 9963244 (-)
CI01000016_09739013_09746676 NA coding downstream 587207 9739013 ~ 9746676 (-)
CI01000016_10386099_10386648 NA coding upstream 33695 10385825 ~ 10387482 (-)
CI01000016_10443526_10488009 NA coding upstream 90715 10442845 ~ 10488186 (-)
CI01000016_10571262_10572444 NA coding upstream 218575 10570705 ~ 10573868 (-)
CI01000016_10600154_10633808 TRIM71 coding upstream 247072 10599202 ~ 10633808 (-)
CI01000016_10637748_10650217 TCAIM coding upstream 285509 10637639 ~ 10650217 (-)
G100302 NA non-coding downstream 46392 10287251 ~ 10287491 (-)
G100301 NA non-coding downstream 46688 10286979 ~ 10287195 (-)
G100298 NA non-coding downstream 65711 10267886 ~ 10268172 (-)
G100296 NA non-coding downstream 67214 10266451 ~ 10266669 (-)
G100295 NA non-coding downstream 70679 10262881 ~ 10263204 (-)
G100378 NA non-coding upstream 123121 10475251 ~ 10476135 (-)
G100379 NA non-coding upstream 124852 10476982 ~ 10478852 (-)
G100351 NA non-coding upstream 177286 10529416 ~ 10551424 (-)
G100413 NA non-coding upstream 300613 10652743 ~ 10715678 (-)
G100352 NA non-coding upstream 313299 10665429 ~ 10681706 (-)
G100190 NA other downstream 281494 10051168 ~ 10052389 (-)
G99178 NA other downstream 518928 9814361 ~ 9814955 (-)
CI01000016_09510177_09512196 ID4 other downstream 821455 9509622 ~ 9512428 (-)
G98691 NA other downstream 1076272 9256102 ~ 9257611 (-)
G98679 NA other downstream 1093954 9234996 ~ 9239929 (-)

Expression


Co-expression Network