G99461


Basic Information

Item Value
gene id G99461
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10385838 ~ 10386651 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU113173
ATCTGTGATATGTCATAGGACAAAATCATATATACATGAGTTACGAGAATAAAAGCAGTAGAGACTACATTCTCACTCGTTTTTTTCTGCAAAATAAATGTATATAGATGGACACACGTATTCATATATTGCATCATCTCCATTGTACAAACAAATTTACATCAGACCGAGCTCAGACTGTGATTGATTGACATTGAAATGGGTGACTCTGTACAGATGATTGGCTAATCAGGTTGATTCATGTAAGTGGTTGAATGGGTCTTATGAGGAGTATTCATACTCCTCTGCGCTCCGTCGGCCAAAATCCATCCATCCCAGGTAATCTCTGTCCTTTATTCTGTGAGTGGAGCCCATGGAGATGATTCTGGCCAGTAGTTCAGTCAAGCTGCTGCGGGGTTCTTCCTCATCCTCTTGTTTAGACAGCAGGCTCAGTTGTCCACTGGAGGGCGCTGCACGGGTGTGGCGTGTGTGTTCCACTATGGTACCGAGATCAGACTGAACCCCATCTTCTGATTGTGTATGGAGAGAAATGCAACTGCTGGTGGAGAGGGCAGCCAGCAGCACGCACACACAGATTCCAGTGTTCATAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU113173 True 591 lncRNA 0.45 2 10385838 10386651

Neighbor

gene id symbol gene type direction distance location
CI01000016_10339126_10370881 TRAK1 coding upstream 13187 10335258 ~ 10372651 (+)
CI01000016_10333877_10334229 NA coding upstream 51492 10333877 ~ 10334346 (+)
CI01000016_10042324_10051398 CTNNB1.L, CTNNB1 coding upstream 333471 10042016 ~ 10052367 (+)
CI01000016_09970010_09999304 NA coding upstream 385117 9969915 ~ 10000721 (+)
CI01000016_09934128_09954587 NA coding upstream 430510 9934128 ~ 9955328 (+)
CI01000016_10421936_10422623 NA coding downstream 33924 10420575 ~ 10424516 (+)
CI01000016_10508464_10510408 NA coding downstream 121813 10508464 ~ 10510832 (+)
CI01000016_10587199_10588775 CNOT10, CNOT10.L coding downstream 200548 10587199 ~ 10588775 (+)
CI01000016_10676271_10682495 NA coding downstream 289436 10676087 ~ 10682839 (+)
CI01000016_10748252_10749230 NA coding downstream 361601 10748252 ~ 10749343 (+)
G99455 NA non-coding upstream 86226 10299359 ~ 10299612 (+)
G99454 NA non-coding upstream 93329 10292300 ~ 10292509 (+)
G99453 NA non-coding upstream 94546 10291067 ~ 10291292 (+)
G99451 NA non-coding upstream 99017 10286566 ~ 10286821 (+)
G99449 NA non-coding upstream 103231 10282363 ~ 10282607 (+)
G99484 NA non-coding downstream 87330 10473981 ~ 10474743 (+)
G99362 NA non-coding downstream 129823 10516474 ~ 10522566 (+)
G99365 NA non-coding downstream 184051 10570702 ~ 10572556 (+)
G99379 NA non-coding downstream 207384 10594035 ~ 10594264 (+)
G99498 NA non-coding downstream 218317 10604968 ~ 10606304 (+)
G99456 NA other upstream 86934 10294391 ~ 10298904 (+)
G99410 NA other upstream 148987 10234400 ~ 10236851 (+)
G99041 NA other upstream 460184 9924418 ~ 9925654 (+)
CI01000016_09796196_09842235 NA other upstream 588898 9795950 ~ 9842576 (+)
G98288 NA other upstream 1383121 8996098 ~ 9002717 (+)
G99940 NA other downstream 1284994 11671645 ~ 11672873 (+)
G100178 NA other downstream 1773990 12160641 ~ 12162845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G91396 cck non-coding NC_035906.1 CM008309.1 16480041 ~ 16481408 (-)