G100379


Basic Information

Item Value
gene id G100379
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10476982 ~ 10478852 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU114221
GAATTAGCCAACTGTGCCGAACCGTACTGCTAGAATGCGAGTAGTGACGTCGTCATTTAGGATCGGTCGTCACTTGTCTGCAGACAATGCAGACCATGGTGCCTGGCTGCCAGTTTCTCCGTAGCTTGCTAAAATGATATTTGAGCAACTTGAACACAAATTAATCATACAATTAAAAGAAATAACTGATCATCCTACATAACGCGGTCACAATTTACATCGCATATCGTGTGTAAATTCTTGCGTTACTAAGACAACAACTGAAGAGCTCCATTATCATCAAAATAGTTGATGATTGTTATCAAAATAGTATTTTTCATGGTAATATGTGGATGTGGATTATGGTAATGCCATATGGAACATCTATTTTTTTAAAATAAGCACTTTTTAATGAGGTTGAGCTGAAAATGTTCTCTAGGCTTGTAATCAAAAATAGGATATCTGTACATTTGTTTGTTGCAAATTTACAGACAATGCAATTGAGATGTTTACATTTGCTTGTTGTGGTAATATTGCTTGTCAACTGAAAACAAAGTTTCCTATTTGTATTAGCAAAATTGCACAAGTTTTAGAGTTTATAAAATCTTTAAAAACAAATTACATTAATTATACATTGATTTCCCCTAATAAAAAGTAAATTGAGTAAGGTGCGATTGTGGATTAGAAATCTGGCCCCCTGTTATTAAGGAGAAAAAATGTTGGCCCTCATCACTATCGAAGTTGCCCAGCCCTGATATATATATATATATATATATAGTGTGTGGTAGGCAAGTGCAAATTGGCATCTCAAACAAGTTCTCCTTTTTCAATATCATTTCATATCTGTCATATGATTTCAGCTTCATTCCTTGTCCAAAATTGTCTAAAATAAAAGTTATGTTGTGTATTTACAAAATCGATACTGGTACGCTGCACTACAATTGCAGCCTCATTGTAGTGAAGCAACAGTGTGTTGCTTTGCCACACAGATTTTGATAGCTGGTCAACTAAATAAAACAGGCGGTGTGCCAAAGATGTAGGCTGTTTTAATGAAGAAAATTTTGATGCCATTTTTACCACAAGTCCCCAATTTGGTGCCCGTCAATCAAGATCCAAACGGAATAAGTATAATAGAGTAAGACAACGATGTAAAATTAAAACAATTTAATAAGAGCAAAGGTTAGCCCACTTCCAATTTACAGTTAAATTCCTTATTGAAAGTTTACTTATTTAAAACATTTTGATATAAACTACGCAATCTTTGAAAACACGTGGTGCTACCGTTATATAGAAGAAAAAAACGCTGACACGGAAATGCAGCGTTTTTTAGTTTTCTCCTGTATTAACAGGATACAAAAACCGTTAATGTAAATCTGACATTCATTTTCATTAATAAATTAAAGTTGTTATTCTGTAATTGCACTGGTGAGTTTTATCATTTTCAGTGTTAAAAATGCGCCAGCGTCATTAAACGTATAAATGCAAGTAACGTTAGCCTACAGATAAAACAATATATGTCGTTTAACGTGAACAAAAACTGGTTCAATACAATCTGGTCATGATTTTAAAATATTACAAAATACCCTGTTATACAGAAAATTAGTATTTAGTCTTTCTGAGTTAGTTATTTTTTCCATTCTGCCTCAGCGTTTTCAGTCATTTGTTTGTGCGCCATAGTCTTTGCTATCTGAAATAATGGCATTAAGTTCTTTGAATTTTTATATTAGCCTAATTTAATTAGACGTTAAGGTTTAGAAGCGCTTCTTCTTCATCCTAAATCAGTACTATAAAGGGTGTAAACAAACTTACCAAGAATTATTTATAGTTCTCAATTCTGGAAAATGGCGTCTTAAGAAAACTGCTTTCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114221 True 1847 lncRNA 0.33 2 10476982 10478852

Neighbor

gene id symbol gene type direction distance location
CI01000016_10386099_10386648 NA coding downstream 89500 10385825 ~ 10387482 (-)
CI01000016_10228314_10299064 ULK4 coding downstream 177918 10228314 ~ 10299064 (-)
CI01000016_10089136_10135299 NA coding downstream 341683 10088716 ~ 10135299 (-)
CI01000016_10025722_10027148 NA coding downstream 449723 10025502 ~ 10027259 (-)
CI01000016_09959197_09962175 NA coding downstream 513797 9957922 ~ 9963244 (-)
CI01000016_10571262_10572444 NA coding upstream 91853 10570705 ~ 10573868 (-)
CI01000016_10600154_10633808 TRIM71 coding upstream 120350 10599202 ~ 10633808 (-)
CI01000016_10637748_10650217 TCAIM coding upstream 158787 10637639 ~ 10650217 (-)
CI01000016_10740961_10745890 ABHD5A, ABHD5 coding upstream 261094 10739946 ~ 10745890 (-)
CI01000016_10799559_10842613 SNRK, SNRKA coding upstream 320333 10799185 ~ 10843409 (-)
G100378 NA non-coding downstream 847 10475251 ~ 10476135 (-)
G100324 NA non-coding downstream 124852 10333883 ~ 10352130 (-)
G100302 NA non-coding downstream 189491 10287251 ~ 10287491 (-)
G100301 NA non-coding downstream 189787 10286979 ~ 10287195 (-)
G100298 NA non-coding downstream 208810 10267886 ~ 10268172 (-)
G100351 NA non-coding upstream 50564 10529416 ~ 10551424 (-)
G100413 NA non-coding upstream 173891 10652743 ~ 10715678 (-)
G100352 NA non-coding upstream 186577 10665429 ~ 10681706 (-)
G100350 NA non-coding upstream 257696 10736548 ~ 10736879 (-)
G100346 NA non-coding upstream 258101 10736953 ~ 10737372 (-)
G100190 NA other downstream 424593 10051168 ~ 10052389 (-)
G99178 NA other downstream 662027 9814361 ~ 9814955 (-)
CI01000016_09510177_09512196 ID4 other downstream 964554 9509622 ~ 9512428 (-)
G98691 NA other downstream 1219371 9256102 ~ 9257611 (-)
G98679 NA other downstream 1237053 9234996 ~ 9239929 (-)

Expression


Co-expression Network