G100351


Basic Information

Item Value
gene id G100351
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10529416 ~ 10551424 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU114187
TATATTAAATTAGATTTATTTATATACAATTTGTAGAGAAAATCATGCATATATTTGAAAAGTGAAGATATGACATTTTCTGTCATTTTCAGTGACTTGGACCCAGAAACAAATCTTTTTACATTGTCATTACAAAGTAAATAGGAAAGTCTCAGCTTTCTAACATTATTATAATGTTTCTACTCCAAACCTTTGTCGGGTCATAAATGGTTGTTTTTGAGAAAATTGACTGAAAAAGATCAGGGGGAGAGAGCACTACAGCGCAGTCATTTGAAATGACTAGTGCGATTTGTCACAACACATTAAACAGTGTCTTACTGTTTACTGTCTTACTGTCTATTAACATTTGCTGTTCAAATTACATTGCAACACTGAGAGTTTGAAAGCCAAGACTTTGTTTTATTCAAAATAACAAAAACATGACAATTCTTGTTTGTTTTTGCAAAAGACTTTAAGTAAAGAGAAGGGGTGATCGTGGGGAGAGATCTCCATACAACAGATTTATTGACCTGCGAGACCTGACCAGTAATCCTTTCTCCAATTATGGAAATCCAATGGAACAGATCCAATCTACTGAGACTTTCTTTTTCATCAAAAATTACACAGAACAGTCAAAAGTCCCATTTTTGGACTTCTGGAAATGATGCCGCTGCAATTAATTTAAATGAATTATTTTTCTTTTGCTCAAAGCACTACTCAATAATGGTGTATGGCTGATTACGTTTTTTTTTTTTTTTTTTTTATTTTTTTATTTTTTTTTTTTCATCCAGTGCATAAAAACGTCTCGGGTTACGTTTGTAAGCCTGGTTCCCTGAATAGGAAACGAGACACTGCGTTGAATCGCATTGGGATCACCTCTGCGTGATTACGTCTTGAAGCACTCGTGAAATCGAACCAATAGTGTGACAGGACGTCAGAGCGGG
>TU114186
TATATTAAATTAGATTTATTTATATACAATTTGTAGAGAAAATCATGCATATATTTGAAAAGTGAAGATATGACATTTTCTGTCATTTTCAGTGACTTGGACCCAGAAACAAATCTTTTTACATTGTCATTACAAAGTAAATAGGAAAGTCTCAGCTTTCTAACATTATTATAATGTTTCTACTCCAAACCTTTGTCGGGTCATAAATGGTTGTTTTTGAGAAAATTGACTGAAAAAGATCAGGGGGAGAGAGCACTACAGCGCAGTCATTTGAAATGACTAGTGCGATTTGTCACAACACATTAAACAGTGTCTTACTGTTTACTGTCTTACTGTCTATTAACATTTGCTGTTCAAATTACATTGCAACACTGAGAGTTTGAAAGCCAAGACTTTGTTTTATTCAAAATAACAAAAACATGACAATTCTTGTTTGTTTTTGCAAAAGACTTTAAGTAAAGAGAAGGGGTGATCGTGGGGAGAGATCTCCATACAACAGATTTATTGACCTGCGAGACCTGACCAGTAATCCTTTCTCCAATTATGGAAATCCAATGGAACAGATCCAATCTACTGAGACTTTCTTTTTCATCAAAAATTACACAGAACAGTCAAAAGTCCCATTTTTGGACTTCTGGAAATGATGCCGCTGCAATTAATTTAAATGAATTATTTTTCTTTTGCTCAAAGCACTACTCAATAATGGTGTATGGCTGATTACGTTTTTTTTTTTTTTTTTTTTACAAATTGCATGTTTTTATTTATATTTAGGTTTACATATGGTATGTCTTTATTTCATTATTTTTCTTATCTAAATTTATAAATTCATCTAGATTGTGATTGTCACAGCAAGCTTTATTGAATTTAAACGTGCAAGAGAGAGTTTACTTTTGTGTATATGTGTGCTTAGCTTCGCACTGGGTGGTTCTTTGCCTCCACATCATGTTAAATTGTTTACCGCACACCTAATATATATATATATATATTACTTCAAAGATTAAATTAATACATTGTTAGCAAACTGTGTGATTTGTATATGTTCATTTCTGAAATCCATTACTTGGACACAGTCACCTCTGATAACAGATCACTTGAAATTGTAATGTAGACACATACATTTTCTGTAAAGCTGCTTTGAAACTATATGTATTGTGAAAAGCACTATACAAATAAATGTGAATTGAAATGTGAATTGAATAAACGTCTGAATAGTTTGTGTGTTTAAAGTGAGTTTTTTTTTCTGTACACACTAAGGTGTGTTTCTGTTATTTAATATCACACAGAGACACTGAGGAGCCATAATAAAGTCCAAAACCAGCATAGAGAGGTTCAGTGAATGTGGAAGTGAATGTGTGTATGTGTGTGAGTGTGTCAGAGACGCTGTAGAAACACAGAGTGCCGGCCGGCTGGTCCAGATACACTCCTACTCTGTTAGAGCGGGATGAAGGGGCAGGAATATCAGTGCTGTTATTGTGCCTGGCAGTGAATCTGTTATCAGAGCAGCTCAGATTCCAAGATTTTTCATTGGATCCAAACCTACAATCACTTCCTCCTTTCCTGCTAATTGTTTTAAATGCCACTGATATATCAGCCCCCCTTCCACTCAATTCAACCTCCCAGTAACAGCGTCCAGTCATGCTCTCTCTACACAGAAGCTGAGCATAGTGCTCAAATCTCTCTGGATGATCAGGATATGACTGCTCCTGTGTCACATGTGTCACCTTCCTGTTCTCCCCAGTCAGAGAGAGATGAGTGTTTGCTGTGTTTGGATCCAGTGT
>TU114188
TATATTAAATTAGATTTATTTATATACAATTTGTAGAGAAAATCATGCATATATTTGAAAAGTGAAGATATGACATTTTCTGTCATTTTCAGTGACTTGGACCCAGAAACAAATCTTTTTACATTGTCATTACAAAGTAAATAGGAAAGTCTCAGCTTTCTAACATTATTATAATGTTTCTACTCCAAACCTTTGTCGGGTCATAAATGGTTGTTTTTGAGAAAATTGACTGAAAAAGATCAGGGGGAGAGAGCACTACAGCGCAGTCATTTGAAATGACTAGTGCGATTTGTCACAACACATTAAACAGTGTCTTACTGTTTACTGTCTTACTGTCTATTAACATTTGCTGTTCAAATTACATTGCAACACTGAGAGTTTGAAAGCCAAGACTTTGTTTTATTCAAAATAACAAAAACATGACAATTCTTGTTTGTTTTTGCAAAAGACTTTAAGTAAAGAGAAGGGGTGATCGTGGGGAGAGATCTCCATACAACAGATTTATTGACCTGCGAGACCTGACCAGTAATCCTTTCTCCAATTATGGAAATCCAATGGAACAGATCCAATCTACTGAGACTTTCTTTTTCATCAAAAATTACACAGAACAGTCAAAAGTCCCATTTTTGGACTTCTGGAAATGATGCCGCTGCAATTAATTTAAATGAATTATTTTTCTTTTGCTCAAAGCACTACTCAATAATGGTGTATGGCTGATTACGTTTTTTTTTTTTTTTTTTTTACAAATTGCATGTTTTTATTTATATTTAGGTTTACATATGGTATGTCTTTATTTCATTATTTTTCTTATCTAAATTTATAAATTCATCTAGATTGTGATTGTCACAGCAAGCTTTATTGAATTTAAACGTGCAAGAGAGAGTTTACTTTTGTGTATATGTGTGCTTAGCTTCGCACTGGGTGGTTCTTTGCCTCCACATCATGTTAAATTGTTTACCGCACACCTAATCATGTTGTTAACAACATATATTCATTACTTCAAAGATTAAATTAATACATTGTTAGCAAACTGTGTGATTTGTATATGTTCATTTCTGAAATCCATTACTTGGACACAGTCACCTCTGATAACAGATCACTTGAAATTGTAATGTAGACACATACATTTTCTGTAAAGCTGCTTTGAAACTATATGTATTGTGAAAAGCACTATACAAATAAATGTGAATTGAAATGTGAATTGAATAAACGTCTGAATAGTTTGTGTGTTTAAAGTGAGTTTTTTTTTCTGTACACACTAAGGTGTGTTTCTGTTATTTAATATCACACAGAGACACTGAGGAGCCATAATAAAGTCCAAAACCAGCATAGAGAGGTTCAGTGAATGTGGAAGTGAATGTGTGTATGTGTGTGAGTGTGTCAGAGACGCTGTAGAAACACAGAGTGCCGGCCGGCTGGTCCAGATACACTCCTACTCTGTTAGAGCGGGATGAAGGGGCAGGAATATCAGTGCTGTTATTGTGCCTGGCAGTGAATCTGTTATCAGAGCAGCTCAGATTCCAAGATTTTTCATTGGATCCAAACCTACAATCACTTCCTCCTTTCCTGCTAATTGTTTTAAATGCCACTGATATATCAGCCCCCCTTCCACTCAATTCAACCTCCCAGTAACAGCGTCCAGTCATGCTCTCTCTACACAGAAGCTGAGCATAGTGCTCAAATCTCTCTGGATGATCAGGATATGACTGCTCCTGTGTCACATGTGTCACCTTCCTGTTCTCCCCAGTCAGAGAGAGATGAGTGTTTGCTGTGTTTGGATCCAGTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114187 False 923 lncRNA 0.35 2 10529416 10551424
TU114186 False 1778 lncRNA 0.35 2 10549596 10551424
TU114188 True 1787 lncRNA 0.36 2 10549596 10551424

Neighbor

gene id symbol gene type direction distance location
CI01000016_10443526_10488009 NA coding downstream 41230 10442845 ~ 10488186 (-)
CI01000016_10386099_10386648 NA coding downstream 141934 10385825 ~ 10387482 (-)
CI01000016_10228314_10299064 ULK4 coding downstream 230352 10228314 ~ 10299064 (-)
CI01000016_10089136_10135299 NA coding downstream 394117 10088716 ~ 10135299 (-)
CI01000016_10025722_10027148 NA coding downstream 502157 10025502 ~ 10027259 (-)
CI01000016_10571262_10572444 NA coding upstream 19281 10570705 ~ 10573868 (-)
CI01000016_10600154_10633808 TRIM71 coding upstream 47778 10599202 ~ 10633808 (-)
CI01000016_10637748_10650217 TCAIM coding upstream 86215 10637639 ~ 10650217 (-)
CI01000016_10740961_10745890 ABHD5A, ABHD5 coding upstream 188522 10739946 ~ 10745890 (-)
CI01000016_10799559_10842613 SNRK, SNRKA coding upstream 247761 10799185 ~ 10843409 (-)
G100379 NA non-coding downstream 50564 10476982 ~ 10478852 (-)
G100378 NA non-coding downstream 53281 10475251 ~ 10476135 (-)
G100324 NA non-coding downstream 177286 10333883 ~ 10352130 (-)
G100302 NA non-coding downstream 241925 10287251 ~ 10287491 (-)
G100301 NA non-coding downstream 242221 10286979 ~ 10287195 (-)
G100413 NA non-coding upstream 101319 10652743 ~ 10715678 (-)
G100352 NA non-coding upstream 114005 10665429 ~ 10681706 (-)
G100350 NA non-coding upstream 185124 10736548 ~ 10736879 (-)
G100346 NA non-coding upstream 185529 10736953 ~ 10737372 (-)
G100358 NA non-coding upstream 195425 10746849 ~ 10749597 (-)
G100190 NA other downstream 477027 10051168 ~ 10052389 (-)
G99178 NA other downstream 714461 9814361 ~ 9814955 (-)
CI01000016_09510177_09512196 ID4 other downstream 1016988 9509622 ~ 9512428 (-)
G98691 NA other downstream 1271805 9256102 ~ 9257611 (-)
G98679 NA other downstream 1289487 9234996 ~ 9239929 (-)

Expression


Co-expression Network