G100347


Basic Information

Item Value
gene id G100347
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10753614 ~ 10763884 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU114180
AGCTAGGGTAGACTGGTTCCTCTCGCCCCGTGACTGGATTAAACCCCAGAGCTCCATGGAATCCAGGCCTCGGTTCTTCAAATGCTTTTTTGCGGCTTAGCGTTCCCCACCCGTACGCTAACGTAGCGCTGCATCTCTTCCACACTTCCAGGAAAACTGTAGACCAAACCAGGTTGAAGACAGCAAACAGAACGTACTTGTCATAGTCCTCCCAGTCAAAGAAGTAGTAAGGGATACCAATGAGGGCCATGGGTACCAAGGCAAACGTGAAATACTCCAGAAATCCAAAGTAGAGCGCCAGACCCTCACCAAAGTAACATCTGATGTCATCCAGTGGCTGGAAGGACAGTTTGATCTTTTTGTACCATGAGAAGGAGAGTCTCTTAAGGTCTTCTTTGTTATGGAGCGGGAAATACTGGTATAGGACACCTTTGGATTGCAATCTCCGCACAACTGATTTTCCAGGGTAGAGCTTAAGCTTAGGGTATCCTGGAACATGCTCTTCAGTCTTAGCTCTAAGTGTGTCCAACTCATGTTTGATAATGTATTGACACTCCGCCTCACTGAGAAATGTTTGACCATCTCCCTCAAAGTCTTTAAAGCTTTCTCTGTTGGCATAAGTGAATGCTCTCATTGTGCCATCTTGAAACTCCTTAAACAACCCAACATCCTCAGCTCCATTTAAGAGCCTCTGTAACGTGGAACCCACCACAAAGACATTTGGATTAGACTTCTGACCATCCTGAGCTGGAAACAGTACTTGATCCACCAACAACTCTGCTCCTCCATTTTGCTGCTTGTCTCTGATCCTGTTTAGTAACCAAGTGATGGCCTCTGCTTTAGTGTCATAAGCAAGCTCCAGGACCACCAGAGGGGTGAACGAAGAGACATCACTGTCAGAAAACGACAAGCCAAGATGCATTTTTCCTGATCCGTGTTGCAAGCGCGATCAGCTGTCCGGAACGCGAAACAGACGTCAGTCCTGCACTTCAGACGCCCATTTAAGCTAGTTGATTTAAAAACCTTGATTGTGTTTGGGTATAATTCATGTGTATGAGCCGGAGAGGTTTAAAGTTAAGGCTGACTTGAGTTCCTCCACGTCATCGAGATGACACAGCCCTAATTCTAGATCACACCCACCC
>TU114179
AGCTAGGGTAGACTGGTTCCTCTCGCCCCGTGACTGGATTAAACCCCAGAGCTCCATGGAATCCAGGCCTCGGTTCTTCAAATGCTTTTTTGCGGCTTAGCGTTCCCCACCCGTACGCTAACGTAGCGCTGCATCTCTTCCACACTTCCAGGAAAACTGTAGACCAAACCAGGTTGAAGACAGCAAACAGAACGTACTTGTCATAGTCCTCCCAGTCAAAGAAGTAGTAAGGGATACCAATGAGGGCCATGGGTACCAAGGCAAACGTGAAATACTCCAGAAATCCAAAGTAGAGCGCCAGACCCTCACCAAAGTAACATCTGATGTCATCCAGTGGCTGGAAGGACAGTTTGATCTTTTTGTACCATGAGAAGGAGAGTCTCTTAAGGTCTTCTTTGTTATGGAGCGGGAAATACTGGTATAGGACACCTTTGGATTGCAATCTCCGCACAACTGATTTTCCAGGGTAGAGCTTAAGCTTAGGGTATCCTGGAACATGCTCTTCAGTCTTAGCTCTAAGTGTGTCCAACTCATGTTTGATAATGTATTGACACTCCGCCTCACTGAGAAATGTTTGACCATCTCCCTCAAAGTCTTTAAAGCTTTCTCTGTTGGCATAAGTGAATGCTCTCATTGTGCCATCTTGAAACTCCTTAAACAACCCAACATCCTCAGCTCCATTTAAGAGCCTCTGTAACGTGGAACCCACCACAAAGACATTTGGATTAGACTTCTGACCATCCTGAGCTGGAAACAGTACTTGATCCACCAACAACTCTGCTCCTCCATTTTGCTGCTTGTCTCTGATCCTGTTTAGTAACCAAGTGATGGCCTCTGCTTTAGTGTCATAAGCAAGCTCCAGGACCACCAGAGGGGTGAACGAAGAGACATCACTGTCAGAAAACGACAAGCCAAGATGCATTTTTCCTGATCCCTGTGTAACACACAGACGAAGAGAGGCAAGGGGCAAAAAATTTATAAATAAAACATATCACTCTCCTCAAGATTCAGATACAGAATACACACCACAAGAAACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU114180 False 1142 lncRNA 0.47 6 10753614 10763884
TU114179 True 1037 lncRNA 0.46 5 10757617 10763884

Neighbor

gene id symbol gene type direction distance location
CI01000016_10740961_10745890 ABHD5A, ABHD5 coding downstream 7724 10739946 ~ 10745890 (-)
CI01000016_10637748_10650217 TCAIM coding downstream 103397 10637639 ~ 10650217 (-)
CI01000016_10600154_10633808 TRIM71 coding downstream 119806 10599202 ~ 10633808 (-)
CI01000016_10571262_10572444 NA coding downstream 179746 10570705 ~ 10573868 (-)
CI01000016_10443526_10488009 NA coding downstream 265428 10442845 ~ 10488186 (-)
CI01000016_10799559_10842613 SNRK, SNRKA coding upstream 35301 10799185 ~ 10843409 (-)
CI01000016_10897488_10911334 NA coding upstream 132302 10896186 ~ 10911334 (-)
CI01000016_10931329_10940939 ENTPD3 coding upstream 166928 10930812 ~ 10941053 (-)
CI01000016_10970952_10971167 NA coding upstream 206623 10970507 ~ 10971167 (-)
CI01000016_10989691_11026452 NA coding upstream 224493 10988377 ~ 11026452 (-)
G100358 NA non-coding downstream 4017 10746849 ~ 10749597 (-)
G100346 NA non-coding downstream 16242 10736953 ~ 10737372 (-)
G100350 NA non-coding downstream 16735 10736548 ~ 10736879 (-)
G100413 NA non-coding downstream 37936 10652743 ~ 10715678 (-)
G100352 NA non-coding downstream 71908 10665429 ~ 10681706 (-)
G100469 NA non-coding upstream 128993 10892877 ~ 10893117 (-)
G100470 NA non-coding upstream 129687 10893571 ~ 10893899 (-)
G100508 NA non-coding upstream 189059 10952943 ~ 10953475 (-)
G100510 NA non-coding upstream 192871 10956755 ~ 10957027 (-)
G100512 NA non-coding upstream 210762 10974646 ~ 10974875 (-)
G100190 NA other downstream 701225 10051168 ~ 10052389 (-)
G99178 NA other downstream 938659 9814361 ~ 9814955 (-)
CI01000016_09510177_09512196 ID4 other downstream 1241186 9509622 ~ 9512428 (-)
G98691 NA other downstream 1496003 9256102 ~ 9257611 (-)
G98679 NA other downstream 1513685 9234996 ~ 9239929 (-)

Expression


Co-expression Network