G100046


Basic Information

Item Value
gene id G100046
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 11690095 ~ 11696461 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU113845
AAATGAGCAGAATCACAGACAGAATTAAGAAGGACATTCCAAATGATATTCCCAATACTGCAGTTTTTGGCAGGACCAGGATCTGCACGATGAAAATGCAGAAGAATATCAAGCAGGCACAGGTGATGTAATATTTGAAGGCCGGCAGGGTCGTTGCTCTATACTCTTTTTCCAATGTTTTATTGTGGAAAAACAAGGATATTCTCTGAATGTCCTCTGATTTGAGCCATTGTTTTTGAGAAGTGATGCCATCGAAAGTGCGAATCATCCTCTCATTGAGTTCCTCCTCAAAACGCTTCTTCTGTGATTTTGTTCTTTCTGAACGTCTCTGAAAGTGGTACTGGCCCATGGGGACATCAGCGGTGTTGATTTTTCCGTTCTCATTGGTCATGCTGTCTCGGTGGTGAAGGTTGGCGAAAGGCTTGGCTGCACCCCAGGACTCTAGGTATCTGGTCATCCTCACTGAAGCTCTCATTTTAGCCCCGTATATGGTGTGTCTGGGTCTGTAGTGGTGTTGAGGACTCTTCCTCTCTGCCTGGAAAAACAGTCCACAGAAACAGACCACAGTCTAGACAATCTTCACTAAACCTACTCAATTGTATTTAGTAAGTACCTTGGACAACTTAGCA
>TU113846
AAATGAGCAGAATCACAGACAGAATTAAGAAGGACATTCCAAATGATATTCCCAATACTGCAGTTTTTGGCAGGACCAGGATCTGCACGATGAAAATGCAGAAGAATATCAAGCAGGCACAGGTGATGTAATATTTGAAGGCCGGCAGGGTCGTTGCTCTATACTCTTTTTCCAATGTTTTATTGTGGAAAAACAAGGATATTCTCTGAATGTCCTCTGATTTGAGCCATTGTTTTTGAGAAGTGATGCCATCGAAAGTGCGAATCATCCTCTCATTGAGTTCCTCCTCAAAACGCTTCTTCTGTGATTTTGTTCTTTCTGAACGTCTCTGAAAGTGGTACTGGCCCATGGGGACATCAGCGGTGTTGATTTTTCCGTTCTCATTGGTCATGCTGTCTCGGTGGTGAAGGTTGGCGAAAGGCTTGGCTGCACCCCAGGACTCTAGGTATCTGGTCATCCTCACTGAAGCTCTCATTTTAGCCCCGTATATGGTGTGTCTGGGTCTGTAGTGGTGTTGAGGACTCTTCCTCTCTGCCTTTGGGTTGATCACTAAGTAAGTTACAACTCCATGCTCTTTTAGATAAGGATCACGTTCCTGGCCATCTCCATCTTCAACCTTATATGACCCGTTCAAGTGCTCAAGGGTCACCGAGGTGATGTGGACTCGTCCAGGTACACCACCTGCTTCCATGTGATTAGCTAAAGTCACATCATGAGACCAGACATCATATTGCCATTTCTGGAGGCCAATCACACCACAGAGAACGTTTCCAGAGTGAACGCCCACTCGCATGTTAATGTCCACTCCTGTGGCGTCTCGCACTTTCTTAATAGCTTCACACATGTCAAGTCCCATCTTCACACAGTTTTTGGCATGATTTGGCAAGGACTCTGGAAGGCCAGATACACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113845 False 629 lncRNA 0.44 6 11690095 11693166
TU113846 True 910 lncRNA 0.46 9 11690095 11696461

Neighbor

gene id symbol gene type direction distance location
CI01000016_11554406_11667350 DNAH5 coding upstream 22368 11554406 ~ 11667727 (+)
CI01000016_11499086_11499455 NA coding upstream 190486 11498878 ~ 11499609 (+)
CI01000016_11344848_11345696 NA coding upstream 344226 11344452 ~ 11345869 (+)
CI01000016_11330944_11334103 NA coding upstream 355629 11330213 ~ 11334466 (+)
CI01000016_11311430_11313782 NA coding upstream 376015 11310881 ~ 11314080 (+)
CI01000016_11949149_11958553 CA14 coding downstream 252688 11949149 ~ 11958718 (+)
CI01000016_12006986_12008107 NA coding downstream 309899 12006360 ~ 12009146 (+)
CI01000016_12012874_12083297 TAF2 coding downstream 316413 12012874 ~ 12083297 (+)
CI01000016_12087864_12111652 ENPP2 coding downstream 391403 12087864 ~ 12111772 (+)
CI01000016_12124439_12128957 NA coding downstream 427124 12123585 ~ 12129766 (+)
G100010 NA non-coding upstream 71105 11618788 ~ 11618990 (+)
G99884 NA non-coding upstream 294496 11394825 ~ 11395599 (+)
G99862 NA non-coding upstream 310978 11373878 ~ 11379117 (+)
G99864 NA non-coding upstream 329861 11357022 ~ 11360234 (+)
G99873 NA non-coding upstream 340828 11349055 ~ 11349267 (+)
G99971 NA non-coding downstream 201525 11897986 ~ 11900048 (+)
G100149 NA non-coding downstream 293708 11990169 ~ 11991067 (+)
G100162 NA non-coding downstream 446524 12142985 ~ 12143342 (+)
G100164 NA non-coding downstream 452057 12148518 ~ 12148815 (+)
G100173 NA non-coding downstream 460559 12157020 ~ 12157594 (+)
G99940 NA other upstream 17222 11671645 ~ 11672873 (+)
G99456 NA other upstream 1391191 10294391 ~ 10298904 (+)
G99410 NA other upstream 1453244 10234400 ~ 10236851 (+)
G99041 NA other upstream 1764441 9924418 ~ 9925654 (+)
CI01000016_09796196_09842235 NA other upstream 1893155 9795950 ~ 9842576 (+)
G100178 NA other downstream 464180 12160641 ~ 12162845 (+)

Expression


Co-expression Network