G100712


Basic Information

Item Value
gene id G100712
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 11999700 ~ 12000027 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU114580
GCAGTTGTGGCCTAATGGTTAGAGAGTCTGACTTGTAATCCGAAGGTGACTGGTTCGAGTCTCAGTACTGGCAGGAAATGTAGATGGGGGAGTGAATGAACAGCGGTCTCTTCCAATCTCATTACCCACAACTGAGATGCCCTTGAGCAAGGCACCTAACCCCCAATCGCTCCCCTGCAGCAAAAAAAAAAAAAAAAAAAAGGCTGCCCGCTGCTCCGTGTGTGTTCAATACTCAGTGCTGTTTGTGTGCATCATGTCACTTTATAAATTGTACAGTGTGCACCTGGCTTAAGTCACAATTATAGGCAAACTTAATTAATAACAGGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU114580 True 328 lncRNA 0.45 1 11999700 12000027

Neighbor

gene id symbol gene type direction distance location
CI01000016_11938043_11946368 NA coding downstream 53139 11937447 ~ 11946561 (-)
CI01000016_11908468_11923802 PRPF3 coding downstream 73935 11907727 ~ 11925765 (-)
CI01000016_11876020_11896223 ICE1 coding downstream 103477 11875492 ~ 11896223 (-)
CI01000016_11866962_11874982 PAPD7 coding downstream 124718 11865984 ~ 11874982 (-)
CI01000016_11670870_11794943 ADCY2A coding downstream 204617 11670818 ~ 11795083 (-)
CI01000016_12116368_12123187 NA coding upstream 116275 12116302 ~ 12123298 (-)
CI01000016_12137876_12146233 NA coding upstream 137747 12137774 ~ 12147884 (-)
G100701 NA non-coding downstream 17393 11982076 ~ 11982307 (-)
G100679 NA non-coding downstream 51872 11947221 ~ 11947828 (-)
G100670 NA non-coding downstream 98355 11901106 ~ 11901345 (-)
G100669 NA non-coding downstream 98839 11900642 ~ 11900861 (-)
G100490 NA non-coding downstream 185598 11748189 ~ 11814102 (-)
G100722 NA non-coding upstream 160728 12160755 ~ 12161232 (-)
G100190 NA other downstream 1947311 10051168 ~ 10052389 (-)
G99178 NA other downstream 2184745 9814361 ~ 9814955 (-)
CI01000016_09510177_09512196 ID4 other downstream 2487272 9509622 ~ 9512428 (-)
G98691 NA other downstream 2742089 9256102 ~ 9257611 (-)
G98679 NA other downstream 2759771 9234996 ~ 9239929 (-)

Expression


Co-expression Network