G100173


Basic Information

Item Value
gene id G100173
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 12157020 ~ 12157594 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU113981
AACTAAGCAAGCCATAGAAGTACATAGAAATTCCAAAAAGAGGGTTGATTACAAATATTGTCATTTATTGTACCCTGTTAATTGTTGGTATTTTAGATTTACACACTTCAAGCAAATTACAAAAGAGTATTTTCTTATTTAATACAAAATCTCAATTGAATCAGAAAACAAGACTCTGTGTTGGTCTTTTACCTACCTGCTGTGCTACCTTCCTCTCTCCAGTAGTCACACCTTCCTTCTGATCTATTGGCCCATATCGAATAATATACAAGTGTGACACGTCAGACCTGTTACACGCTACAATCTCTCTCCCCACCTTGAAGATATACAGGTCCCTCTACATCCTTTACGCCCGTTTCACACTGCAAGCTTGAGTGGCACGTGAGCAGCTTGTGAGCGTAACTACATCATCGCTGCAGAGACGTGCGACTATTCACACTGGAAGCGTTTGTACAGCGTCACAGCAGCGGCTCCAAGCTACATATAAAGTGAGCATTTCTTTACAAAGATAGCTATAAATTTGTTTTTATAAGTTGGTCATTTATAAACTTGATAGTCTTGAAAGTTTGTTAACG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU113981 True 575 lncRNA 0.39 1 12157020 12157594

Neighbor

gene id symbol gene type direction distance location
CI01000016_12124439_12128957 NA coding upstream 27254 12123585 ~ 12129766 (+)
CI01000016_12087864_12111652 ENPP2 coding upstream 45248 12087864 ~ 12111772 (+)
CI01000016_12012874_12083297 TAF2 coding upstream 73723 12012874 ~ 12083297 (+)
CI01000016_12006986_12008107 NA coding upstream 147874 12006360 ~ 12009146 (+)
CI01000016_11949149_11958553 CA14 coding upstream 198302 11949149 ~ 11958718 (+)
G100164 NA non-coding upstream 8205 12148518 ~ 12148815 (+)
G100162 NA non-coding upstream 13678 12142985 ~ 12143342 (+)
G100149 NA non-coding upstream 165953 11990169 ~ 11991067 (+)
G99971 NA non-coding upstream 256972 11897986 ~ 11900048 (+)
G100046 NA non-coding upstream 460559 11690095 ~ 11696461 (+)
G100176 NA non-coding downstream 1288 12158882 ~ 12159090 (+)
G100178 NA non-coding downstream 3047 12160641 ~ 12162845 (+)
G99940 NA other upstream 484147 11671645 ~ 11672873 (+)
G99456 NA other upstream 1858116 10294391 ~ 10298904 (+)
G99410 NA other upstream 1920169 10234400 ~ 10236851 (+)
G99041 NA other upstream 2231366 9924418 ~ 9925654 (+)
CI01000016_09796196_09842235 NA other upstream 2360080 9795950 ~ 9842576 (+)

Expression


Co-expression Network