G100178


Basic Information

Item Value
gene id G100178
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 12160641 ~ 12162845 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU113986
AGTGAAAAATCAAACAAGACTTTATTGAACTACTTCTATGATTAAAAGAAACTAAGGCTAAACACACACACACACATACATTCACGGAGTTGAGAGAGTGAGTTATGGAGAAAGTCCCAACTTCAGTACTAATAATTAAAATCACAACCTGAGAAAAATCACAAAAGCAGAGCTTTGGTTTGATTCCTTCTGTTTAAAGGATTTTCACCAGTTTCCAGCAAGAGAGAGAGAATTTTGCTTGTACCTGCGTTCGATTTGACAACTGAGGTAGTCGGGTTGTTCCGTGGCTAGCATCAAGCTGAAAGGGGAATCCCGACTTGGATTGGCTGTCTTTGAGGTGACGTCTCTCGGGGAAGCCCTGCGTTGGGTTGCGCGGGAGCTTTGAAAGGAGGTCGCCGGCTGGTGATGTGCTGGAAGCTCTTCTGAGAGTCTGTTGCTTGGGTGGCTCTCGGCTTTGGAGAATTTTGGTCAAGAAGTTCAACGGGGTGTTTCAGAGTTCTGGATGCGAACTGTTTGATGTAAAACGAGCCCCTGGTCAAACCACAAGCGAAGACTGTTGGGTGAAAATATCAGCCACGACTCTTGGATGAAAAATAGTCAGCGACTGTTAGATGGAAAAGCAGCAGCGACCGTTAGATGGAAAAAGCCGCTGCGGTTTTTAGATGTAAAAATCAGCTATGGTGAAAGTATTAGCTCCGAGCTGTTTTGGACAGCATAGTTTTAAAGGAGAAGGTTTGGCTCCATCCTCCGACGCGATTCTCCAATGAGACGTTGCTACGGAGCTTAGACACGCCCCGTACTGTTTCTCCTTTGTTCATTGATTGCATCATATGACGTTCGTGGAACATTATCCTGTTTTGATTAGTAACTTTATAAAGTTTCCTAATATCTCCCTGATACAGAAATTCAATGTTTCATGCACCCAGAATTAAAGAGAATAATAAATCCTGTAATTCAAAGTCAAACATGACACATCTCTTGCACACATATTACTAACCTAACCTAATAAATCAATGATTACAATGATGCATTTGAGGAAAACAAACATATAATGCATCGAATAGACATGTTAGTAATCACATCATAGTGTGTATGATTCTGAATATAGTTAACCCTTTTGGGATCCTTTAGAATGTTCAGTTCATAGTCTGTAAGAAAGAAGATAGTTGAAAAGTTGAAGTCCCAAGTGACCAGGTCAGATGCGATCACTCAGTACAAAGGAGGTATTTGTATTGGACCCATTGTGCTTTAGGTCCGTTGATTAATGTTTCCTGTCCCATTTCGTTGATACAAAAGGTCTTATGAGAGGATCGATGAAATTTTATGTGATTAGGAAGGCTTAAGAACAGATATTCTCTGTTCTTAAGTCACGTTACCAGTTCTCTTAACGCTGATTAAGTTGGGAAACAAATGAACAACTGTTGCATCGTTCGTTGTGTGTTTGTTGCCTGAGGGTTTAAGAATTAAGTCAGGGAGGACAATTCCTTGTTCATTGTTCACAATTAGTATTCAGTTAAAGTTGTTTGGTAACCCCTGTTAAACGAGGTCCTACATGCCAAAACAGCAATCCTGAGTCTGAAGAGTTCCTTGAGCTTTTGAGTTGTATTTCTCGTTGGTCTGGTCCTCACCAGCCTGCTAAGCTCAGCACGGTGAAGCTCTATCAAGCAGTTACCTTACTTCCCAGATGTGAACACCTGGTCTGGGGAAAACTTCCTGCTAACGTTAATGTTTCCCCAGGAAGCACAGTCATTGTTGAACCCACTACTTCACGTTCAGCGCCCCGTCATGTTTTTGTGGGACGCGTAGTGACTACTGTGTGGGGTGATCGATGGGTGTCGATGAAGATTTTGAACCCCACACAGTCTCCAATAACTCTTCGTCGTAATGCTAAGCTAGCTGATGTGTCTCCTTGTTTGGCAGTGGAGGATGTTACTGTCACACAAAGTCTGTGCAGATCTCACGATGTTCCTGATGCGGCTTTCCCCAAGCCCATTCCATCTGTTGATCCTGTGCGGTTATTGCACGAGTACGGTTTGGAAGACATCGATATCGAAGCGTGTGAAGTCTCCAAGTTATGGAAGGAGGAGTTGGCAAGTGTTATCGTGTCTTATCGTGATGTTTTCTCCAGAGACCAACTTGATTGTGGAGAGGCGAAAGACTTTGAACACAGGATACATTTGTGTGATGAACGTCCATTCCGTCTGC
>TU113987
AGTGAAAAATCAAACAAGACTTTATTGAACTACTTCTATGATTAAAAGAAACTAAGGCTAAACACACACACACACATACATTCACGGAGTTGAGAGAGTGAGTTATGGAGAAAGTCCCAACTTCAGTACTAATAATTAAAATCACAACCTGAGAAAAATCACAAAAGCAGAGCTTTGGTTTGATTCCTTCTGTTTAAAGGATTTTCACCAGTTTCCAGCAAGAGAGAGAGAATTTTGCTTGTACCTGCGTTCGATTTGACAACTGAGGTAGTCGGGTTGTTCCGTGGCTAGCATCAAGCTGAAAGGGGAATCCCGACTTGGATTGGCTGTCTTTGAGGTGACGTCTCTCGGGGAAGCCCTGCGTTGGGTTGCGCGGGAGCTTTGAAAGGAGGTCGCCGGCTGGTGATGTGCTGGAAGCTCTTCTGA
>TU113993
AGTGAAAAATCAAACAAGACTTTATTGAACTACTTCTATGATTAAAAGAAACTAAGGCTAAACACACACACACACATACATTCACGGAGTTGAGAGAGTGAGTTATGGAGAAAGTCCCAACTTCAGTACTAATAATTAAAATCACAACCTGAGAAAAATCACAAAAGCAGAGCTTTGGTTTGATTCCTTCTGTTTAAAGGATTTTCACCAGTTTCCAGCAAGAGAGAGAGAATTTTGCTTGTACCTGCGTTCGATTTGACAACTGAGGTAGTCGGGTTGTTCCGTGGCTAGCATCAAGCTGAAAGGGGAATCCCGACTTGGATTGGCTGTCTTTGAGGTGACGTCTCTCGGGGAAGCCCTGCGTTGGGTTGCGCGGGAGCTTTGAAAGGAGGTCGCCGGCTGGTGATGTGCTGGAAGCTCTTCTGAGAGTCTGTTGCTTGGGTGGCTCTCGGCTTTGGAGAATTTTGGTCAAGAAGTTCAACGGGGTGTTTCAGAGTTCTGGATGCGAACTGTTTGATGTAA
>TU113988
ACACATACATTCACGGAGTTGAGAGAGTGAGTTATGGAGAAAGTCCCAACTTCAGTACTAATAATTAAAATCACAACCTGAGAAAAATCACAAAAGCAGAGCTTTGGTTTGATTCCTTCTGTTTAAAGGATTTTCACCAGTTTCCAGCAAGAGAGAGAGAATTTTGCTTGTACCTGCGTTCGATTTGACAACTGAGGTAGTCGGGTTGTTCCGTGGCTAGCATCAAGCTGAAAGGGGAATCCCGACTTGGATTGGCTGTCTTTGAGGTGACGTCTCTCGGGGAAGCCCTGCGTTGGGTTGCGCGGGAGCTTTGAAAGGAGGTCGCCGGCTGGTGATGTGCTGGAAGCTCTTCTGA
>TU113991
ACACATACATTCACGGAGTTGAGAGAGTGAGTTATGGAGAAAGTCCCAACTTCAGTACTAATAATTAAAATCACAACCTGAGAAAAATCACAAAAGCAGAGCTTTGGTTTGATTCCTTCTGTTTAAAGGATTTTCACCAGTTTCCAGCAAGAGAGAGAGAATTTTGCTTGTACCTGCGTTCGATTTGACAACTGAGGTAGTCGGGTTGTTCCGTGGCTAGCATCAAGCTGAAAGGGGAATCCCGACTTGGATTGGCTGTCTTTGAGGTGACGTCTCTCGGGGAAGCCCTGCGTTGGGTTGCGCGGGAGCTTTGAAAGGAGGTCGCCGGCTGGTGATGTGCTGGAAGCTCTTCTGAGAGTCTGTTGCTTGGGTGGCTCTCGGCTTTGGAGAATTTTGGTCAAGAAGTTCAACGGGGTGTTTCAGAGTTCTGGATGCGAACTGTTTGATGTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU113986 False 2205 TUCP 0.43 1 12160641 12162845
TU113987 False 426 lncRNA 0.44 1 12160641 12161066
TU113993 False 522 lncRNA 0.45 1 12160641 12161162
TU113988 False 355 lncRNA 0.47 1 12160712 12161066
TU113991 True 451 lncRNA 0.47 1 12160712 12161162

Neighbor

gene id symbol gene type direction distance location
CI01000016_12124439_12128957 NA coding upstream 30875 12123585 ~ 12129766 (+)
CI01000016_12087864_12111652 ENPP2 coding upstream 48869 12087864 ~ 12111772 (+)
CI01000016_12012874_12083297 TAF2 coding upstream 77344 12012874 ~ 12083297 (+)
CI01000016_12006986_12008107 NA coding upstream 151495 12006360 ~ 12009146 (+)
CI01000016_11949149_11958553 CA14 coding upstream 201923 11949149 ~ 11958718 (+)
G100176 NA non-coding upstream 1551 12158882 ~ 12159090 (+)
G100173 NA non-coding upstream 3047 12157020 ~ 12157594 (+)
G100164 NA non-coding upstream 11826 12148518 ~ 12148815 (+)
G100162 NA non-coding upstream 17299 12142985 ~ 12143342 (+)
G100149 NA non-coding upstream 169574 11990169 ~ 11991067 (+)
G99940 NA other upstream 487768 11671645 ~ 11672873 (+)
G99456 NA other upstream 1861737 10294391 ~ 10298904 (+)
G99410 NA other upstream 1923790 10234400 ~ 10236851 (+)
G99041 NA other upstream 2234987 9924418 ~ 9925654 (+)
CI01000016_09796196_09842235 NA other upstream 2363701 9795950 ~ 9842576 (+)

Expression


Co-expression Network