CI01000017_01534818_01538322


Basic Information

Item Value
gene id CI01000017_01534818_01538322
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 1534276 ~ 1538593 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000017_01534818_01538322.mRNA
GTTTAAAAAAGGGGAAAGGAATGGATGCAAAAGTGCACAGATCATTGTGAGTTATAAACACGTTTTTATTTTTTATTTTTTTTTTTTTTTTTTTTATAAACACATGTCTTGTACTGTCCCTTTAAACAATACAGCTAGAAGAATGGTTTCATGCATAAGTTTGCAACTGCAGATGTAGAAAAAGCATACATCATGTTGTTGGAAAAATGTTAATGTGCTAATTTAATTAGGGAAATGTGCATAAGGAGCGAATACAAGTCCAGTTGGGCATTTGCTAATTTTTTTGATACATGCAAGTAGGTATCACACAGTATAACCTCACAAGAAGCTGCGATGTCTGCTCAGTTTTACCTTTTCCTCAATGTGTCCAACAATCTTTGCATGTTTAATACAAACATTCTCTTAAATGTGCATGTGAGAGTTTGTGTGTGTGTTTGGGAAGGTTAAAGTGTGTTGAGAAAGACTCCCAGACAGAGGGAAGATACTCAGCATGAGAGCTTAAGCGTTTTTCTCTGTGCTCTGATTCCTGCAGGAGTGCACCCATGGAGCGACTGCTGCTGCTGTGCCTGGCTCTGTTCTCCATGCCATCCTATGCCATGCTGTGCCCCAAACGCTGCACCTGCCAGAACTTGCTGCCCTCGTACACCGTGCTGTGTGCCAAAACCGGCCTGCTATTCGTACCACCTAATATCGACCGGCAGACCGCCGAGCTGCGACTGATGGACAACTTCATCACCACCCTGCGCCACAGAGATTTCGCTAACATGAGCAGCCTCATACACCTCACGCTCTCCCGGAACACCATCAGCCAGATCCAACCGTACGCCTTCGCCGACCTGCAGGATCTGCACGCGCTGCATCTGGACGCAAACCGGCTGACGGTGCTGGACGACACCCATTTGCAGGGGTTGGTGAATCTGCGCCACCTTATACTTGCAAATAACCAGCTTCACAGCATCTCAGATGGAGCCTTTCAAGATTTCCTAGAAACTCTCGAGGATCTCGATCTTTCTTATAACAATCTGGTGGATTTGCCGTGGGACACTATAGCTATGCTGGCCAGCGTCAACACCCTTAGTTTGGACCACAATCTCGTCGACTTTGTGCCCGAAGGGATATTTTCGAATCTTCACAAACTGGCCAGACTGGACATGACGTCCAACAAGCTGAAGAAGATCCCGCCGGATCCTCTGTTCCTACGCATTCCCGTGTATGCGAAATTGAAAGGCTCGCCGCTGACCGCGCTGGTGCTCAGTTTCGGTGGGAATCCGTTGCATTGCAATTGTGAGCTGGTTTGGCTACGACGCCTCACGCGCGAGGACGATCTGGAGACGTGCGCGTCCCCGCGAGAGCTCGCAGGCAAATACTTCTGGACGATCCGCGAGGAGGAGTTCGTGTGCGAGCCGCCCATGATCACTCGGCACACGTCCAAGATGTTTGTGATGGAGGGTCAAGAGGTTAGTCTGCGATGCCGCTCTGTTGGAGACCCTGAGCCGACCGTCCACTGGGTCAGTCCGGACGGGAAGCTGATCGGCAACACCTCGCGCACCATATGTTACGATAACGGCTCTCTGGATATCTTGACGGCCACGGTGAAAGACTCCGGCGTGTTCACCTGCATAGCGTCCAATGCGGCCGGAGAGGCTACGGCTCCTGTGGAATTAGTCGTGAACCCTTCGCCGCATTACGACCCCAAACTGGAGCCTGAACCGGGACCCTCGGACATGCCGACTTCCATTAAGTCCAACAGTAGTGGTAGCGGAGGCCAGTCCCGAGCTGATCAGCGGGTCAGCGTCTCAGAAATAACCTCAAGCTCAGTGATGATCCGCTGGCCTCCTCAAAGCCACATCCCTGGAGTCCGCATGTACCAGATCCAGTACAACAGCTCCACCGATGACATCCTCATATACAGGGAGAGGCTGGCATCTGAGACTGGGGGTGTTAATGGCTTATGGCGGAATCCTATTCAGATAGCGGATGAAACATTGCAATTCCTCTGATGAATACAAATGGACCTCGATGATTGCCAGCCAACAAAGACTCAATAATATCATGAATGCAATGTATGAAATACAGCCATATTTTTGTTCTGTGCTAATCAAAGGACCCTTCCCAACGGGACCAGCTGTTTTAGGGTATCTGCTCTACATGTCAGAAAAGCTCTTGAAGGATTGTCATTAGTGCACAAACAGATTGGCTTCCACTGTAATAGTTTCAGCCTGACGCAATTCAAACTGAATTTTGCACAAGCAGACGCATTGACACCCTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000017_01534818_01538322.mRNA True 2271 mRNA 0.49 2 1534276 1538593

Neighbor

gene id symbol gene type direction distance location
CI01000017_01104045_01131388 NA coding upstream 402811 1104045 ~ 1131465 (+)
CI01000017_01067189_01070509 NA coding upstream 463682 1067052 ~ 1070594 (+)
CI01000017_01057310_01063843 NA coding upstream 469950 1056229 ~ 1064326 (+)
CI01000017_00969981_00977045 NA coding upstream 557048 969930 ~ 977228 (+)
CI01000017_00722020_00762518 NA coding upstream 770903 722020 ~ 763373 (+)
CI01000017_01605157_01612590 NA coding downstream 66564 1605157 ~ 1613008 (+)
CI01000017_01654491_01655975 NA coding downstream 115817 1654410 ~ 1656182 (+)
CI01000017_01737674_01834279 GNAL, GNAL.S, GNAL2 coding downstream 197972 1736565 ~ 1834374 (+)
CI01000017_01910759_01910947 NA coding downstream 372166 1910759 ~ 1911056 (+)
CI01000017_02052993_02060890 NA coding downstream 514400 2052993 ~ 2061564 (+)
G101002 NA non-coding upstream 83380 1403460 ~ 1450896 (+)
G101004 NA non-coding upstream 106549 1419677 ~ 1427727 (+)
G101003 NA non-coding upstream 115084 1417169 ~ 1419192 (+)
G101000 NA non-coding upstream 132925 1354231 ~ 1401351 (+)
G101005 NA non-coding upstream 138432 1394016 ~ 1395844 (+)
G101181 NA non-coding downstream 46716 1585309 ~ 1585564 (+)
G101187 NA non-coding downstream 57802 1596395 ~ 1596614 (+)
G101007 NA non-coding downstream 85976 1624569 ~ 1625221 (+)
G101199 NA non-coding downstream 123967 1662560 ~ 1666903 (+)
G101830 NA non-coding downstream 164906 1703499 ~ 1703994 (+)
G100957 NA other upstream 564957 927083 ~ 969319 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013104 si:cabz01090165.1 coding NC_007129.7 CM002902.2 49411417 ~ 49447042 (+)
bowfin (Amia calva) AMCG00013549 LOC101074320 coding CM030125.1 CM030125.1 35806801 ~ 35814022 (+)