Gene
RNA
| Item | Value |
|---|---|
| gene id | G100803 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000017 |
| NCBI id | null |
| chromosome length | 2146858 |
| location | 130742 ~ 176661 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU114692 | True | 265 | lncRNA | 0.02 | 2 | 130742 | 176661 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000017_00104364_00117225 | PDPR | coding | upstream | 12741 | 104364 ~ 118001 (+) |
| CI01000017_00050292_00078906 | TSPAN4A, TSPAN4 | coding | upstream | 50993 | 48626 ~ 79749 (+) |
| CI01000017_00213124_00215167 | NA | coding | downstream | 36320 | 212981 ~ 215481 (+) |
| CI01000017_00217246_00240217 | NA | coding | downstream | 40376 | 217037 ~ 240552 (+) |
| CI01000017_00243226_00251143 | RELN | coding | downstream | 66286 | 242947 ~ 251195 (+) |
| CI01000017_00269400_00274920 | RELN | coding | downstream | 92739 | 269400 ~ 275013 (+) |
| CI01000017_00275839_00288868 | RELN | coding | downstream | 99178 | 275839 ~ 289106 (+) |
| G100825 | NA | non-coding | upstream | 99321 | 30540 ~ 31421 (+) |
| G100823 | NA | non-coding | upstream | 101746 | 28763 ~ 28996 (+) |
| G100839 | NA | non-coding | downstream | 29770 | 206431 ~ 206784 (+) |
| G100810 | NA | non-coding | downstream | 204081 | 380742 ~ 383464 (+) |
| G100861 | NA | non-coding | downstream | 229533 | 406194 ~ 406544 (+) |
| G100864 | NA | non-coding | downstream | 235227 | 411888 ~ 412113 (+) |
| G100807 | NA | non-coding | downstream | 241247 | 417908 ~ 478431 (+) |
| G100957 | NA | other | downstream | 750422 | 927083 ~ 969319 (+) |
