G100872


Basic Information

Item Value
gene id G100872
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 448507 ~ 451024 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU114770
GAGACATTCCCATGAATGTTGATTGTAGTTACTTTTTCCAAAGGAATGCGATGCTTGAACATGCTGTGTTGTTGGCCTTTTACTTGTACCTGAAATCCTTCAGATTTGATGACGATGAACATCTCAAAATCTTCTCCCTTTTTAAAGGGGTTGTCAGAGACACTTTGCTCAGCTCCCCATTTTCCATTCGTAAAGCTGTTCATGACCACCTTCGAACCCATTCGAGGGTTAAAATGGAAAGCAGTGTCATGCTTGTCAGTAGGCCCAGTCTTGAAATTGATTGAAAACCGGTCAGCATTAGTAGGAACTACTCCCTGCACGTATAAGGCCATGCCTTCTCTCGTTCCCTCAGGAATTTGGCCCACATAAGGAAGAGTAGGGTTTTGGACTGGCTGCAAGATCTCTGACTGTACGGTGGAATGTTCCCCACGTGAGCTGCCCAGACTGATGATTTTTTTTGTAACTTCTGTAGGAAATGAAGATGTGCTCCAGTTTTGTATGAAGCCAAAAAGGTTCACGGCAACATCTCCAGCGATATTTAACGCTGACACTTTTTCCAGCGGTATACGGTGCTTGAATGTGTACTGCTCCTTGCCATTCACATATACCTGATATCCTTCGGATTTGATGACAGTGAACATCTCAAAAGTTTGTCCCTTTTTAAAGGGGTTGTCAGAGAAACTTTCCTCAGCTTCCCATTTTTTGTTCCTGAAACTGTTCAAGGCTACCTTTGAGCCAATTCGAGGGTTGAAGTGGAAAGCAATGTCATCGTCATTGCCCACGGACTTCCCGGTCTTGAAATTTATTACAAACTGGTCAGCATTATTGGGAACAACTCCTTGCAAGTACAAGGCCATGCCTTCTCTCAGTCCTCCTGAAATTGGGCCCACATAAGGAAGGCTCTGCAGTAAACACATGAANNN

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU114770 True 923 lncRNA 0.44 7 448507 451024

Neighbor

gene id symbol gene type direction distance location
CI01000017_00384546_00386526 NA coding upstream 61676 384402 ~ 386831 (+)
CI01000017_00358322_00362255 NA coding upstream 85789 358006 ~ 362718 (+)
CI01000017_00303881_00314010 CTTN coding upstream 134020 303881 ~ 314487 (+)
CI01000017_00290432_00292826 RELN coding upstream 153873 290432 ~ 294634 (+)
CI01000017_00275839_00288868 RELN coding upstream 159401 275839 ~ 289106 (+)
CI01000017_00505305_00517048 UBE2Q1, UBE2Q2, UBE2Q2L coding downstream 52721 503745 ~ 517048 (+)
CI01000017_00542622_00545974 NA coding downstream 91598 542622 ~ 546304 (+)
CI01000017_00558732_00563124 NA coding downstream 107708 558732 ~ 563322 (+)
CI01000017_00565569_00581478 NA coding downstream 113857 564881 ~ 581631 (+)
CI01000017_00643676_00677273 NA coding downstream 192652 643676 ~ 677299 (+)
G100864 NA non-coding upstream 36394 411888 ~ 412113 (+)
G100861 NA non-coding upstream 41963 406194 ~ 406544 (+)
G100810 NA non-coding upstream 65043 380742 ~ 383464 (+)
G100839 NA non-coding upstream 241723 206431 ~ 206784 (+)
G100803 NA non-coding upstream 271846 130742 ~ 176661 (+)
G100805 NA non-coding downstream 153346 604370 ~ 617022 (+)
G100806 NA non-coding downstream 239550 690574 ~ 694968 (+)
G100953 NA non-coding downstream 437131 888155 ~ 888997 (+)
CI01000017_00969981_00977045 NA non-coding downstream 518458 969930 ~ 977228 (+)
G101035 NA non-coding downstream 571005 1022029 ~ 1076674 (+)
G100957 NA other downstream 476059 927083 ~ 969319 (+)

Expression


Co-expression Network