Gene
RNA
| Item | Value |
|---|---|
| gene id | G100806 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000017 |
| NCBI id | null |
| chromosome length | 2146858 |
| location | 690574 ~ 694968 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU114695 | True | 1014 | lncRNA | 0.57 | 10 | 690574 | 694968 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000017_00687984_00689034 | NA | coding | upstream | 927 | 687984 ~ 689647 (+) |
| CI01000017_00643676_00677273 | NA | coding | upstream | 13275 | 643676 ~ 677299 (+) |
| CI01000017_00565569_00581478 | NA | coding | upstream | 108943 | 564881 ~ 581631 (+) |
| CI01000017_00558732_00563124 | NA | coding | upstream | 127252 | 558732 ~ 563322 (+) |
| CI01000017_00542622_00545974 | NA | coding | upstream | 144270 | 542622 ~ 546304 (+) |
| CI01000017_00722020_00762518 | NA | coding | downstream | 27052 | 722020 ~ 763373 (+) |
| CI01000017_00969981_00977045 | NA | coding | downstream | 274962 | 969930 ~ 977228 (+) |
| CI01000017_01057310_01063843 | NA | coding | downstream | 361261 | 1056229 ~ 1064326 (+) |
| CI01000017_01067189_01070509 | NA | coding | downstream | 372084 | 1067052 ~ 1070594 (+) |
| CI01000017_01104045_01131388 | NA | coding | downstream | 409077 | 1104045 ~ 1131465 (+) |
| G100805 | NA | non-coding | upstream | 73552 | 604370 ~ 617022 (+) |
| G100868 | NA | non-coding | upstream | 209536 | 423599 ~ 481038 (+) |
| G100807 | NA | non-coding | upstream | 212143 | 417908 ~ 478431 (+) |
| G100872 | NA | non-coding | upstream | 239550 | 448507 ~ 451024 (+) |
| G100864 | NA | non-coding | upstream | 278461 | 411888 ~ 412113 (+) |
| G100953 | NA | non-coding | downstream | 193187 | 888155 ~ 888997 (+) |
| G101035 | NA | non-coding | downstream | 327061 | 1022029 ~ 1076674 (+) |
| G101034 | NA | non-coding | downstream | 377294 | 1072262 ~ 1074172 (+) |
| G101039 | NA | non-coding | downstream | 393420 | 1088388 ~ 1090576 (+) |
| G100957 | NA | other | downstream | 232115 | 927083 ~ 969319 (+) |
