G101039


Basic Information

Item Value
gene id G101039
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 1088388 ~ 1090576 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU114966
GCAAATCTTATCAAATCATAAACTCATTTCTAATTTAATACTGTCACATAACAGCAAAAATATACACAAAACTCAAAACAAAGACACACAATTAAATTAAAAAACAAAAAATCTGAATCATCACTTGGTTCGTTCCACCTCATATTCCAGCTACATCACGTCACGATCAACAACAGGTTTCCCGCCCGGCCTGGATCTATTGATTATTCATTGTTTGGTGGTGTTTTACATGGTGTTGTCGTAGGAGGGTGTGGAGTACTGCGGTGTCTGCGGGCCCTGCATGGCCCCGGTCGCTGCGCCCATAGCTGCCTGCTGCGCTGCCTGCTGAACGTGAGGGTTTTTCCAGGCGCCAGACACCCACTCCTCCTGCGCTTTACTCATGCTGCCTCCACTGCCTCGGTAGAAGTTATGGACCTTCGTGAGCGTGATAAATGAAATGGCAGCGACTGCAGTGAACATGATCGTGGGGATTAGCATAATGATGGAGGCAAAGATACTCGTGCCAAAGAAGGAGATGGTGCCCAACCAGCCGCTGAAACAGAGAGATGAGACCATAAGGTGCATAAAGTACAATAGAATAATACATACAGTATTCTAGTATCAGCATAAAGCTATACAGTTAGCATACAGAATCCTGATATTTGGGTTTGAATTAATTATCTTTTTTTTAGCATAATATGAGCATGAATTTGCACTTACCAAACACCCCATCCTGGAATACCAATGGCCTGAATTATAGCAATGAACAGTTGTGCCATAAAGACAAAGAAGAAAGCCATGAAGTAAAACGAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU114966 True 793 lncRNA 0.43 2 1088388 1090576

Neighbor

gene id symbol gene type direction distance location
CI01000017_01067189_01070509 NA coding upstream 17794 1067052 ~ 1070594 (+)
CI01000017_01057310_01063843 NA coding upstream 24062 1056229 ~ 1064326 (+)
CI01000017_00969981_00977045 NA coding upstream 111160 969930 ~ 977228 (+)
CI01000017_00722020_00762518 NA coding upstream 325015 722020 ~ 763373 (+)
CI01000017_00687984_00689034 NA coding upstream 398741 687984 ~ 689647 (+)
CI01000017_01104045_01131388 NA coding downstream 13469 1104045 ~ 1131465 (+)
CI01000017_01534818_01538322 NA coding downstream 443700 1534276 ~ 1538593 (+)
CI01000017_01605157_01612590 NA coding downstream 514581 1605157 ~ 1613008 (+)
CI01000017_01654491_01655975 NA coding downstream 563834 1654410 ~ 1656182 (+)
CI01000017_01737674_01834279 GNAL, GNAL.S, GNAL2 coding downstream 645989 1736565 ~ 1834374 (+)
G101035 NA non-coding upstream 11714 1022029 ~ 1076674 (+)
G101034 NA non-coding upstream 14216 1072262 ~ 1074172 (+)
G100953 NA non-coding upstream 199391 888155 ~ 888997 (+)
G100806 NA non-coding upstream 393420 690574 ~ 694968 (+)
G101067 NA non-coding downstream 57350 1147926 ~ 1148227 (+)
G101091 NA non-coding downstream 85580 1176156 ~ 1209849 (+)
G101059 NA non-coding downstream 100697 1191273 ~ 1194608 (+)
G101143 NA non-coding downstream 222151 1312727 ~ 1357699 (+)
G101000 NA non-coding downstream 263655 1354231 ~ 1401351 (+)
G100957 NA other upstream 119069 927083 ~ 969319 (+)

Expression


Co-expression Network