G101199


Basic Information

Item Value
gene id G101199
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 1662560 ~ 1666903 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU115143
TCTTGGTATTGCAGGATTGGCAGACAGATGACAGACTTGGAGCTTGAGCAGACACAGATGAACTCACGGGAGACGAGGAGACAACGAGGAGTCGAGGGAACACACAGGAGACAGGTAAGTATCTTCGGAGGAGTCCTTGAGGTAAGCAGAGTGGTGAGTACCATGTGCAAACGAGACCGGACAGTGACTGTGTAAGAACGTGAGCCTTTTGTGCTGCTGCGCCAGGCTCTGTGGAGACAGAAACAGAGGGATGGTGAGGCTTTAACAAAGAGACGTGGAAAGTGGGGTGAATTTTATATTCAGGTGGGAGCTGGAGTTGGTAGGTGACAGGGTTGATCTGCCGCAGGATGGTGAACGGGCCAATGAATCTGGGACTCAGTTTCCTACAGGGCAGGCGCATTCTGATGTCCCTTGTGGACAGCCAAACCTTCTGTCCTGGCTGGTAGTTGGGGGCGTTGGAGCGTCGAAGGTTGGCTGTCATCCTGCGCCTGCGTAGGGCTCATTGGAGCTGATGGTGCGCGGAGTCCCAGACCCTCTCGCTCTCTCGGAACCAGTAGTCGACCGCAGGTACGTCCGAGGGCTCTCCTGACCAGGGGAACAGTGGGGGTTGG
>TU115144
TCTTGGTATTGCAGGATTGGCAGACAGATGACAGACTTGGAGCTTGAGCAGACACAGATGAACTCACGGGAGACGAGGAGACAACGAGGAGTCGAGGAGACAACGAGGAGTCGAGGGAACACACAGGAGACAGGTAAGTATCTTCGGAGGAGTCCTTGAGGTAAGCAGAGTGGTGAGTACCATGTGCAAACGAGACCGGACAGTGACTGTGTGAGAACGTGAGCCTTTTGTGCTGCTGGTGATGAGGGTGCTGATGAGCTGCAGGTGTGAGTGATTAATATTCTGGTGATGACGTGCGCTGTGTCTGTGAGAGTGTAGAGCCTGGCGTGTCTGTGACACGTTCATCTTTAGGAAAAAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU115143 False 611 lncRNA 0.56 2 1662560 1663555
TU115144 True 360 lncRNA 0.51 2 1662560 1666903

Neighbor

gene id symbol gene type direction distance location
CI01000017_01654491_01655975 NA coding upstream 6378 1654410 ~ 1656182 (+)
CI01000017_01605157_01612590 NA coding upstream 49552 1605157 ~ 1613008 (+)
CI01000017_01534818_01538322 NA coding upstream 123967 1534276 ~ 1538593 (+)
CI01000017_01104045_01131388 NA coding upstream 531095 1104045 ~ 1131465 (+)
CI01000017_01067189_01070509 NA coding upstream 591966 1067052 ~ 1070594 (+)
CI01000017_01737674_01834279 GNAL, GNAL.S, GNAL2 coding downstream 69662 1736565 ~ 1834374 (+)
CI01000017_01910759_01910947 NA coding downstream 243856 1910759 ~ 1911056 (+)
CI01000017_02052993_02060890 NA coding downstream 386090 2052993 ~ 2061564 (+)
CI01000017_02061927_02067003 NA coding downstream 394963 2061866 ~ 2067178 (+)
G101007 NA non-coding upstream 37339 1624569 ~ 1625221 (+)
G101187 NA non-coding upstream 65946 1596395 ~ 1596614 (+)
G101181 NA non-coding upstream 76996 1585309 ~ 1585564 (+)
G101002 NA non-coding upstream 211664 1403460 ~ 1450896 (+)
G101830 NA non-coding downstream 36596 1703499 ~ 1703994 (+)
G101835 NA non-coding downstream 45434 1712337 ~ 1712628 (+)
G101839 NA non-coding downstream 48761 1715664 ~ 1715957 (+)
G101812 NA non-coding downstream 154993 1821896 ~ 1842938 (+)
G101821 NA non-coding downstream 177551 1844454 ~ 1956653 (+)
G100957 NA other upstream 693241 927083 ~ 969319 (+)

Expression


Co-expression Network