Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

economic fish

G101810

Basic Information

Item	Value
gene id	G101810
gene name	NA
gene type	non-coding
species	grasscarp (Ctenopharyngodon idella)
category of species	economic fish

Chromosome Information

Item	Value
chromosome id	CI01000017
NCBI id	null
chromosome length	2146858
location	1951249 ~ 1954527 (+)
genome version	v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU115838
ACATATAGACCTCATCGGGCCTAACAACTTTCATGCTCTAAGTTATACGCCACCCCAACAGGAAGTCGCCTATTATGGGTTGTTTGAAAAACGCATGCTCTGGAATTTGATATACTCCTCCTAGCCGATTAATCCGATCACCACCAAACTCGGTCAGCATGAAGTCAAGATATTGAGGATGTAAAATTGCCAGCGGATTTTTGATATCT

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TU115838	True	209	lncRNA	0.43	2	1951249	1954527

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
CI01000017_01910759_01910947	NA	coding	upstream	40193	1910759 ~ 1911056 (+)
CI01000017_01737674_01834279	GNAL, GNAL.S, GNAL2	coding	upstream	116875	1736565 ~ 1834374 (+)
CI01000017_01654491_01655975	NA	coding	upstream	295067	1654410 ~ 1656182 (+)
CI01000017_01605157_01612590	NA	coding	upstream	338241	1605157 ~ 1613008 (+)
CI01000017_01534818_01538322	NA	coding	upstream	412656	1534276 ~ 1538593 (+)
CI01000017_02052993_02060890	NA	coding	downstream	98466	2052993 ~ 2061564 (+)
CI01000017_02061927_02067003	NA	coding	downstream	107339	2061866 ~ 2067178 (+)
G101812	NA	non-coding	upstream	108311	1821896 ~ 1842938 (+)
G101839	NA	non-coding	upstream	235292	1715664 ~ 1715957 (+)
G101835	NA	non-coding	upstream	238621	1712337 ~ 1712628 (+)
G101830	NA	non-coding	upstream	247255	1703499 ~ 1703994 (+)
G101199	NA	non-coding	upstream	284346	1662560 ~ 1666903 (+)
G101883	NA	non-coding	downstream	23148	1977675 ~ 1977943 (+)
G101887	NA	non-coding	downstream	26703	1981230 ~ 1981498 (+)
G101891	NA	non-coding	downstream	28942	1983469 ~ 1983707 (+)
G102039	NA	non-coding	downstream	123739	2078266 ~ 2084974 (+)
G102044	NA	non-coding	downstream	144975	2099502 ~ 2101068 (+)
G100957	NA	other	upstream	981930	927083 ~ 969319 (+)

Expression

Co-expression Network