G102044


Basic Information

Item Value
gene id G102044
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 2099502 ~ 2101068 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU116093
AGCGCGTGCACATGAATGCGTGACATCAGTGGCAAACAGCCAATCACATGCCTTGCAACAGAAAGAAACTGTGATTTACTTCTCGCGAGAGAGTCAACGTGATTCAAAACTCTTTTGCTGAAGAAAATGAAGAATTTAAACGCATTTACACTAAAGAAGAAACTTGTCCATGAAAAAGGACAAATAAAAGAAATTATCTTGCTCTATCAGAGCAAGTGAAAATTGTCAAGTGTTTGTATAGTTTATTATATACAGCAATAGAGACTCAAACATGTAAGGTTATGTAGTCATTTTTAAAGAGTTATCTGTTGATTCTACATTCTGTATATATTAATATTTATTTAAAATAAATGCTTAATAATAACTGTTAAACTAAAATTGCTTGTGTGAAATGGATTAATAATATAGATCATATAATAATTATTTATCTTTAATTTGGAGGAAGAGAAACTGGGGGAGGGACTTTATTGCGTTGGATGTGTCAGTGTCACTTTGCTCACATCTGATTGGTCCAATTTCGGTTTGAGATCTCTTACCCAGAACATAACCTGCCCCGGAGCAGGTTAGCTGTGGAGCGTAAGTTACTATGGTGATAAACA
>TU116092
TTGACAAAACCAAACCACTCCAATCCGGCTTTGTTGGTACCATGATGCTGATCATCAACTTTCTCTGTCAACTCAGGCTTTGATCCTGAGTTTGTGGAGCACGTGCACATGAATGCGTGACATCAGTGGCAAACAGCCAATCACATGCCTTGCAACAGAAAGAAACTGTGATTTACTTCTCGCGAGAGAGTCAACGTGATTCAAAACTCTTTTGCTGAAGAAAATGAAGAATTTAAACGCATTTACACTAAAGAAGAAACTTGTCCATGAAAAAGGACAAATAAAAGAAATTATCTTGCTCTATCAGAGCAAGTGAAAATTGTCAAGTGTTTGTATAGTTTATTATATACAGCAATAGAGACTCAAACATGTAAGGTTATGTAGTCATTTTTAAAGAGTTATCTGTTGATTCTACATTCTGTATATATTAATATTTATTTAAAATAAATGCTTAATAATAACTGTTAAACTAAAATTGCTTGTGTGAAATGGATTAATAATATAGATCATATAATAATTATTTATCTTTAATTTGGAGGAAGAGAAACTGGGGGAGGGACTTTATTGCGTTGGATGTGTCAGTGTCACTTTGCTCACATCTGATTGGTCCAATTTCGGTTTGAGATCTCTTACCCAGAACATAACCTGCCCCGGAGCAGGTTAGCTGTGGAGCGTAAGTTACTATGGTGATAAACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU116093 False 599 lncRNA 0.34 3 2099502 2101068
TU116092 True 696 lncRNA 0.35 2 2100287 2101068

Neighbor

gene id symbol gene type direction distance location
CI01000017_02061927_02067003 NA coding upstream 32324 2061866 ~ 2067178 (+)
CI01000017_02052993_02060890 NA coding upstream 37938 2052993 ~ 2061564 (+)
CI01000017_01910759_01910947 NA coding upstream 188446 1910759 ~ 1911056 (+)
CI01000017_01737674_01834279 GNAL, GNAL.S, GNAL2 coding upstream 265128 1736565 ~ 1834374 (+)
CI01000017_01654491_01655975 NA coding upstream 443320 1654410 ~ 1656182 (+)
G102039 NA non-coding upstream 14528 2078266 ~ 2084974 (+)
G101891 NA non-coding upstream 115795 1983469 ~ 1983707 (+)
G101887 NA non-coding upstream 118004 1981230 ~ 1981498 (+)
G101883 NA non-coding upstream 121559 1977675 ~ 1977943 (+)
G101821 NA non-coding upstream 142849 1844454 ~ 1956653 (+)
G102046 NA non-coding downstream 2334 2103402 ~ 2103811 (+)
G102093 NA non-coding downstream 26421 2127489 ~ 2129122 (+)
G102094 NA non-coding downstream 27644 2128712 ~ 2130482 (+)
G100957 NA other upstream 1130183 927083 ~ 969319 (+)

Expression


Co-expression Network