Gene
RNA
| Item | Value |
|---|---|
| gene id | G102094 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000017 |
| NCBI id | null |
| chromosome length | 2146858 |
| location | 2128712 ~ 2130482 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU116162 | True | 267 | lncRNA | 0.29 | 2 | 2128712 | 2130482 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000017_02061927_02067003 | NA | coding | upstream | 61534 | 2061866 ~ 2067178 (+) |
| CI01000017_02052993_02060890 | NA | coding | upstream | 67148 | 2052993 ~ 2061564 (+) |
| CI01000017_01910759_01910947 | NA | coding | upstream | 217656 | 1910759 ~ 1911056 (+) |
| CI01000017_01737674_01834279 | GNAL, GNAL.S, GNAL2 | coding | upstream | 294338 | 1736565 ~ 1834374 (+) |
| CI01000017_01654491_01655975 | NA | coding | upstream | 472530 | 1654410 ~ 1656182 (+) |
| G102046 | NA | non-coding | upstream | 24901 | 2103402 ~ 2103811 (+) |
| G102044 | NA | non-coding | upstream | 27644 | 2099502 ~ 2101068 (+) |
| G102039 | NA | non-coding | upstream | 43738 | 2078266 ~ 2084974 (+) |
| G101891 | NA | non-coding | upstream | 145005 | 1983469 ~ 1983707 (+) |
| G101887 | NA | non-coding | upstream | 147214 | 1981230 ~ 1981498 (+) |
| G100957 | NA | other | upstream | 1159393 | 927083 ~ 969319 (+) |
