CI01000018_01286376_01296170


Basic Information

Item Value
gene id CI01000018_01286376_01296170
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 1285588 ~ 1296170 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_01286376_01296170.mRNA
ATAAAGCTGTTGAGCTACTAGTCTCTTGTTTGAGCAGTAGTTCTACAGATATACGTACCATAGGAGCTTCAGCACTTTGGGCTCTGTTGCACAACAATCAGAAGAGGAGCAAGATGGTGGCAGTACAAAAGGATTACTGGTACTTCTTGGTACTCATGATGCCGCTCTGTTTTCTGAAAGGTAATGTTTTTAGCAAAGGCTCTGTTCAGATGAAAGCCCCAGAATCAACAGTCATACTGCGTGAGGGAATGATATTGGACTGCCTGTGTCCGTGGACTGGCCAGCTCACTATGGTCTCTTGGACTAAAAAGTCTCTTTCACAACCTGTAGCTGTTTATCATCCTCAGTATGGTACCAACTTCGAATCATCTTATGATGGTAGAGTGGAGTTTCTGAAAACCACCACGATGGATGGCAGCATTTCCATAAGGAACGTCACTGAGGGTGACATCGGCCAGTATCATTGCTCTCTGCAGACCTATCCTCAGGGTTCATGGACAAAAGACACATTTGTCAAAAAAACAGACACTAAGTTGGTGGTGGCAGAGAACGACAACCTGACCATTAATTGTGACCTTGTCCACAACGGTGAGGTTTATCAAGTAAGCATAGAGAAACTGAACACTGAGGAGGGGAGTAGCAATATTATAGCAACGTGTCAGATGCTGGAGGATGGCGTGGAGCTGAACGAGTTCAACAGTAGAGGACGAGTGAACTGCAGTGATGCTATGGAGGTCAGTCTACACCTCACCAACATCATCAAAGAAGATGGAGGATTGTACCGCTGCAACTTCAGCACAGACGCCGGTGTCCAGTCCACCACAGTCCTGCTGACCACTCTATCTGCTCAAGATTTAAGGGGTCTTCATCACATGCTGTACGTGTATATTGGAGGAGGGCTGGTTGGTGTCGCTCTTCTGATGATTTTGTTAGTGACGTGGGTGAACAGGATGAAAAGGAAGAGAGAGGACTACAGAATCAAACTGCACCCTGCCAAAAGACAGCGTAACACATATGATCATGGCTGTGTCTATGACAGGATGAAAAAGGGGACCAAAAGTGGGGCAAGAGATAAAGAAATATACGTTAACTTTCAGATTGTGAGGGCTCATAAAAAACAAAAACAAAAGAGATGAGATACCACCACTCAATAGAGTTTTATACTGATAAATTGGCGTCTACATGGAAGAACTAGCTTTGGCTGAAGAGCAGAAATCATAAAACATAAACCAAACATCAGTGCCAAGAAATGCGTTTGCACCTGAATACTAATGGATGGATCAGAGGGGAAATTCCTAATAATGCAGAAGATTAATGGAGCAGTGTGTATAATTTGTCATTTGATGAACCACTACCACCATCATCATCGCCATCTTCATCATTACATTAACCATTCAAGCCTGGCCCAGAACCCACATTTCATGGCATTTCATTGCATAATGGTGCTGGATGTTGGCTGCTCATGACTACATTGTGGAAAAATGTCCTCTCTGCTCCTCGGTGAAGTCTGTTTGACAGGTAATCTGCTTAAGAAGCTTTCTGGACTGTATCAAAGCCAGATATAAGCCAAGCACGGTCACTATGAACAGACACCGAAGCAACACTTTAGTTTGAGTGACTCTAATTATCGAATGATTGGATCTCAGAGAGCTTTTGAGTGGATGAATCTTCTCAAAATCACATCCTTGTCTCGTGTCTCAGTTTGAGCCTGAATGCTTTCTCTCTGCAGAAATGGAAGTACCAGCCTCACGAATGAAAACGAGGATACGAAGGCTTCATTACTCATAGGTTGAACTGACAATGCTCAGCTTACAGGCGGAATATGATTTGTATTGTGAGGAATAATGACTTTAAATGATTAGGATCATTCAAGAGTTCAGATTTGATTTTTGAGCACAGAGCACTTAACATGTACAGGAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_01286376_01296170.mRNA True 1924 mRNA 0.43 7 1285588 1296170

Neighbor

gene id symbol gene type direction distance location
CI01000018_01030816_01076302 JPH1A coding downstream 209286 1029837 ~ 1076302 (-)
CI01000018_00992108_01000450 ZFHX2 coding downstream 285138 991446 ~ 1000450 (-)
CI01000018_00985130_00987510 NA coding downstream 297899 984992 ~ 987689 (-)
CI01000018_00837737_00838788 NA coding downstream 446724 837550 ~ 838864 (-)
CI01000018_00777676_00783256 NA coding downstream 502059 776512 ~ 783529 (-)
CI01000018_01307800_01363530 RTTN coding upstream 10812 1306982 ~ 1363933 (-)
CI01000018_01583609_01585366 CBLN2A, CBLN2, CBLN2B coding upstream 286740 1582910 ~ 1586169 (-)
CI01000018_01707576_01707950 NA coding upstream 410890 1707060 ~ 1708380 (-)
CI01000018_02069280_02070789 MTRR coding upstream 773110 2069280 ~ 2071231 (-)
CI01000018_02080382_02098031 KLHL15 coding upstream 784162 2080332 ~ 2098302 (-)
G103081 NA non-coding downstream 104836 1180208 ~ 1180752 (-)
G103064 NA non-coding downstream 107167 1177785 ~ 1178421 (-)
G103066 NA non-coding downstream 107885 1177392 ~ 1177703 (-)
G103067 NA non-coding downstream 154896 1129731 ~ 1130692 (-)
G103051 NA non-coding downstream 230818 1047654 ~ 1054770 (-)
G103137 NA non-coding upstream 91455 1387625 ~ 1387829 (-)
G103140 NA non-coding upstream 95877 1392047 ~ 1392546 (-)
G103150 NA non-coding upstream 129690 1425860 ~ 1426106 (-)
G103156 NA non-coding upstream 147601 1443771 ~ 1444038 (-)
G103181 NA non-coding upstream 185430 1481600 ~ 1481964 (-)
G103842 NA other upstream 663327 1959497 ~ 1960058 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other upstream 1090038 2389201 ~ 2488018 (-)
G104968 NA other upstream 2185934 3482104 ~ 3500514 (-)
G105104 NA other upstream 2711527 4007697 ~ 4017817 (-)
G105200 NA other upstream 2947297 4243467 ~ 4246010 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location