CI01000018_02125709_02126759 (PTGDSB.1)


Basic Information

Item Value
gene id CI01000018_02125709_02126759
gene name PTGDSB.1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 2125110 ~ 2126817 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_02125709_02126759.mRNA
ACAGCCAACTTTACCTTCTGAACTGCATACAGAGAGAGAACCCTACACTTCTGCAGCCATGACTGTCGTATTGAAGATGCTGTGCGTTCTGCTCTGTGCAGTGTTCGCCTCTGCTGAAGTCATGCCCATGCCTGACTTCGACCTGGAAAAGATGGGAGGAAAGTGGTATCTCATTGGCTTTGCTACAAATGCAGAATGGTTTGTCAGTCACAAGGCTGACATGAAAATGGGAACTGCTATGCTGGTGGCTACCGCGGAAGGAGACCTTGACATCAGTTACTCTAATCTAAAGAGTGATGGTTCCTGCTGGAAGATGACGCACCTTGCCAAGAAAACTGAGACTCCAGGACGTTTTGTCTTCCACAGCCAGCGTTGGGAAAATGAAAATGACATGCGCGTGGTTGACGCCAAATTTGACGAGTACGCGTTCGTTCACACTATAAAGACCAAGGGAGGCGTGTCTTATGTTCTCAACAAACTTTACAGTCGTACCAAAGAAATTACTGATGACTTGAAGGAAAAGTTCAGGCAGTTCTCTCTGGACACCGGCATCCTTGAGGAAAACATTGCCATGCTGCCACCAAACGGAGAATGCTCAGATGAATCATCAACCAAATAAGGACAAAGACAACTTCAGCTGGCCTGATCATTTCACCTGAAAAACAGATCTGAATTTGCTGGCCTTCATCTGCTTGGTTTTGGTCTTTTTCACTTTGTGCCTTAAACACCATTAAGTTGAATCAATTTGCAACTCCAGAGCTTATCCAAAGGACGTCTCAAGCAGGGGGACAGAATGGCAAAAGTATTACCTTGTCCAAATAATGCATTTTACTAAGTTTAACTGGTGTGTCTTTATTGACGTGCAAGGTTTTTTGTTTTTTTGGTGTTGATGTTGGAAAAAACATGTCTTATCACTAATGCCGCACCTACAAACTTTTTTTTTTTTTTTTTTTTTTATGAACAGTGCTCTCATTTTTTTCTTTGGTGGTTTTGTTTACTGCTGTTGAATTAAATTGGTTTACAAATTACAAATGTTGGGGTGATTCATTCAAATTCTCCATTTTACAATAAAAAAAAAAAAAAAAAAAAAACATTTTGGACACAAAATACTGTTTATTACTTCTGTATTTACAAATATTTCTTATACACATAACATAACATCTTTTAGAATCTCTTTATTCCAAATTATACATTTTCAGTATCTGTGTAAAAAATAAA

Function

symbol description
ptgdsb.1 Enables retinoic acid binding activity. Predicted to be located in extracellular region. Is expressed in eye; female organism; male organism; postcranial axial skeleton; and reproductive system. Human ortholog(s) of this gene implicated in carotid artery disease; intrahepatic cholangiocarcinoma; and urinary tract infection. Orthologous to several human genes including PTGDS (prostaglandin D2 synthase).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process

KEGG:

id description
K01830 PTGDS; prostaglandin-H2 D-isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_02125709_02126759.mRNA True 1218 mRNA 0.39 6 2125110 2126817

Neighbor

gene id symbol gene type direction distance location
CI01000018_02080382_02098031 KLHL15 coding downstream 26808 2080332 ~ 2098302 (-)
CI01000018_02069280_02070789 MTRR coding downstream 53879 2069280 ~ 2071231 (-)
CI01000018_01707576_01707950 NA coding downstream 416730 1707060 ~ 1708380 (-)
CI01000018_01583609_01585366 CBLN2A, CBLN2, CBLN2B coding downstream 538941 1582910 ~ 1586169 (-)
CI01000018_01307800_01363530 RTTN coding downstream 761177 1306982 ~ 1363933 (-)
CI01000018_02129101_02134686 C8G coding upstream 1576 2128393 ~ 2134686 (-)
CI01000018_02135812_02137218 MSRB2 coding upstream 8933 2135750 ~ 2137218 (-)
CI01000018_02138741_02148435 ARMC3 coding upstream 11827 2138644 ~ 2148435 (-)
CI01000018_02195642_02198053 SKIDA1 coding upstream 67364 2193361 ~ 2199400 (-)
CI01000018_02282563_02282856 NA coding upstream 155737 2282554 ~ 2283072 (-)
G103867 NA non-coding downstream 8687 2115946 ~ 2116423 (-)
G103892 NA non-coding downstream 98998 2025886 ~ 2026112 (-)
G103889 NA non-coding downstream 102506 2022286 ~ 2022604 (-)
G103885 NA non-coding downstream 120503 2004342 ~ 2004607 (-)
G103855 NA non-coding downstream 139027 1985871 ~ 1986083 (-)
G103929 NA non-coding upstream 73805 2200622 ~ 2200950 (-)
G103931 NA non-coding upstream 76393 2203210 ~ 2203567 (-)
G103939 NA non-coding upstream 110042 2236859 ~ 2239022 (-)
G103944 NA non-coding upstream 138395 2265212 ~ 2265446 (-)
G103961 NA non-coding upstream 172994 2299811 ~ 2302001 (-)
G103842 NA other downstream 165052 1959497 ~ 1960058 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other upstream 259391 2389201 ~ 2488018 (-)
G104968 NA other upstream 1355287 3482104 ~ 3500514 (-)
G105104 NA other upstream 1880880 4007697 ~ 4017817 (-)
G105200 NA other upstream 2116650 4243467 ~ 4246010 (-)
CI01000018_04856240_04875704 DAP other upstream 2728264 4855081 ~ 4876532 (-)

Expression


Co-expression Network