CI01000018_03035039_03102978 (ARFGEF1)


Basic Information

Item Value
gene id CI01000018_03035039_03102978
gene name ARFGEF1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 3034649 ~ 3103604 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_03035039_03102978.mRNA
ATTCCCTCGAAAATTGAAAAAAAAAGTGTGATTTGATTTGTAAAATAAGGTCTGTGGTTAACATTACTGAAGAGAGCTTTAAGTTTCCTACAATAGACTATAAATTACAGTTATACCTCAAACGTGAATTTTGAAACTGTGTCAAAACATAGATTGCTAACAAGTTGCTACATAACTTATGGACAACATAACACAGCTATTTTTATATCTATGACCACAAGTACCACAAGGAAGTGAGTTTTCTTGTTTGACGTATCGGACAACCAGTTCTTAGCTCATTTTTTTACTCTTTTATTTAGTAATTTATTATTATTTATTTGTATATTTTTTATTTTATTTAAAAATCTGTATTAATTGTTGTTATTTAAACTTTATAATTCTTATACTCTCTCACTCTGCCTCACTGCGGCCGTTTCTACGTGTGTGACGTCATTTCCTTCCAACATGGCGCAGGCAGCAGGTCGCTGATGGAAAACTGAGGGATTTACCCCACCTTCTGGCTTTATTTATGTTTCTCTATTGAGGGCACCATCCGCCGGAGAAAAACTCAATCATACGGGAATATCTAAAGATCGCGGATCCAGCCTCCGTTGGGACAGGTCCTCCTCGCCCCGTCGCAGCGCGTCATGTATGAAGGCAAAAAGACGAAAAACATGTTTTTAACCAGAGCTTTGGAAAAGATCTTGGCCGACAAGGAGGTGAAAAAGGCTCATCACTCGCAGCTGCGCAAAGCCTGTGAGGTGGCACTAGGACACATGACCGCACATGCGTGCGTGCTTTCGCTTAATAAAGAAGGTGGAATTAAATGTGTGTGTGAGGGCCGTCTGGCTTATCCCGGCTCTGCTGCGATGGAGCTTCTGCATGTGTGTACCGCAAAACACAACACCATCCTCTATGCTTTTTGCTTAATTGATGGAACAAACCTCTCCATGCAGCTGGAGACTGAATTAGCTCAGAGAGTTGTTTGCCCAGTCCAGGGATTCGCAGAAGGTCTAGAGGCCCTGCTAAAGTCGACAGGGGGACACACGGAAGCGCCTCCTAATGTGGAGGAAATCAAGGCGGAATCTGAGAAATTAAGCTCACCGGCTGGGGACAACAAGTCAAGTTCCAGTACTCTGCCGCCAATCAAATCCAAGACCAACTTCATTGAAGCAGATAAATACTTCCTGCCGTTTGAGTTGGCCTGTCAGTCCAAATGTCCACGCATCGTCATTACCTCTCTAGACTGTTTACAGAAACTCATAGCATATGGTCACCTGACGGGGAGCGCTCCAGACAACACAACCCCAGGAAAAAAGCTCATCGACAGGATCATAGAGACTATATGTGGCTGTTTCCAAGGACCACAGACTGATGAAGGCGTCCAATTGCAAATTATAAAGGCCTTGCTTACCGCCGTGACCTCCCAGCAAATAGAGATCCATGAAGGCACGGTGCTGCAGGCCGTAAGAACGTGCTACAACATCTATCTGGCCAGTAAGAACCTCATCAACCAGACCACGGCCAAAGCCACCCTCACGCAGATGCTGAATGTGATATTCGCCCGCATGGAGAACCAAGCACTGCAGGAAGCCAAGCAGATGGAGCGAGAGAGGCACAGGCAGCATTCTCCAGTCAGCCAGCAAGAACCGGAGTCTCCTGGACAGCGGCACACCGACACCCCTGGCAAAAGCCTCCCTGCTGAGGCCAACGGCGGACCGGGACACCAGGGCAGCAAGGTCGAGCAGGGATCCCCACCGTACGAGAGTCCCGAGCCAGAGAACGGCACTGACTTCTGCCCTGCGGAAAATGAGCAGACCGAGGCAGACCAGGCCACTGCAGCTGCACAAAGTGCGGCAGAGCATGGAACGGATCCCACAGTGGAAGAAGAAAGCCCGAACTATGAAGAGAAGGCACAGGAGATTGTACAGAGCATATTGCAAGAAGTCGTAAACACAGTGGCTGGAGGCGAGTTATACTCTTCTTGCTGTGAGAAGCTTAAAGGGACAGTTCACCCAAAAATAAATGATATTAAGGAAAGCCGTGAGGGTGAGGCTGAGCCAGCTGAGGGCATTCCAAACTCTCTGGAAGAGGAGGGAGGGTTGGGCAGCGACAACGAAAATGTTCACGCCAACGGCATCCCTGGCACACCCATTTCTGCGAGCTTCACTCCGTCCCTGCCCGACGACAGACTGTCTGTCTCATCCAATGACACTCAGGAATCAGTAGCTACCACTGGTCCAGCACCAGGTGCAAAGTTTTCCCACATTCTCCAGAAGGATGCATTCTTGGTGTTCCGTTCACTCTGCAAGCTCTCCATGAAGCCCCTTTCAGACGGTCCCCCTGATCCGAAATCCCACGAGCTGCGGTCCAAGGTCCTCTCGTTGCAGCTCCTCCTGTCCATCCTGCAGAACGCTGGGCCCATCTTCAAAACTAACGAGATGTTCATCAACGCCATCAAGCAGTACCTGTGCGTAGCGCTGTCTAAAAACGGCGTCTCCTCCGTCCCCGAAGTGTTCGAGCTGTCGCTGTCCATCTTTCTCACCCTCCTGTCCAACTTCAAGACGCATCTCAAGATGCAAATTGAGGTGTTTTTCAAAGAAATTTTTCTGTATATTCTGGAAACATCCACAAGCTCATATGACCACAAGTGGATGGTCATTCAAACCCTCACCAGAATATGTGCGGATGCCCAGAGTGTGGTAGATATCTATGTTAATTATGATTGTGACCTGAATGCTGCTAATATTTTCGAGAGGCTGGTGAATGACCTCTCAAAGATTGCACAAGGACGAGGAGGCCATGAACTGGGTACAACCCCACTTCAGGAGCTGACTCTAAGAAAGAAAGGACTGGAGTGTCTGGTGTCCATTCTCAAATGTATGGTGGAATGGAGCAAAGACCAATATGTCAACCCCAATTCCCAGACAAGTCTCGGCCAAGAAAAGCCTTTAGAGCAGGAAACCAATGAGTCGAAGCATCCAGAAACGATTAACCGCTACGGCAGCATAAACTCATTGGACTCCACCGCCTCGTCAGGCATCGGGAGCTACAGCACGCAGATGTCTGGGACGGACAACCCTGAGCAGTTTGAGGTCCTCAAACAACAGAAGGAGATCATAGAGCAAGGCATTGACCTGTTCAACAAAAAACCAAAGAGGGGCATTCAGTACCTGCAGGAACAAGGCATGCTGGGAACCACGCCTGAAGATATCGCCCAATTTTTACATCAAGAGGAGAGACTTGACTCTATCCAGGTAGGAGAGTTTCTTGGAGACAACGATCGCATCAATAAAGAGGTTATGTATGCCTACGTCGACCAAATGGACTTCCAGGGCAAAGACTTCGTGCCAGCGCTGCGCATGTTCCTTGAGGGTTTCCGTCTACCCGGAGAGGCCCAGAAAATCGATCGACTGATGGAGAAATTTGCTGCTAGATATTTAGAATGCAACCAAGGGCAAACACTGTTCGCCAGCGCAGACACTGCATACGTCCTCGCGTATTCAATCATCATGTTGACTACAGATCTACACAGTCCGCAGGTGAAGAATAAAATGACAAAAGAGCAATACATCAAGATGAACCGAGGTATCAATGACAGTAAAGATTTACCGGAGGAGTATCTCTCAGCCATTTATGATGAAATCGCAGGGAAAAAAATATCTATGAAGGAGACAAAGGAATTAACTCTCAAGTCAAATAAGCAAAGTGTGGCCAGTGAGAAGCAGAGGAGGCTTCTGTATAATGTTGAGATGGAGCAGATGGCAAAGACAGCTAAGGCTCTGATGGAGGCTGTCAGCCACGTTCAGGCCCCCTTCACCAGCGCCACCCACCTCGAGCACGTCAGACCAATGTTTAAGCTGGCCTGGACACCCTTTCTGGCTGCGTTCAGCGTGGGTCTGCAAGACTGTGATGACACTGAGGTGGCTTCTTTGTGTCTTGAGGGAATCCGCTGTGCTATCAGGATAGCGTGCATCTTCAGCATTCAGTTGGAGCGAGATGCGTACGTTCAGGCTCTGGCCCGCTTCACGTTGCTGACGGCCAGCTCGGGCATCACTGAGATGAAGCAGAAGAACATCGACACCATCAAGACCCTCATTACAGTGGCTCACACGGATGGAAATTACCTAGGAAACTCCTGGCATGAGATCCTGAAGTGCATTAGTCAGCTGGAGTTGGCCCAGCTCATCGGGACAGGAGTGAAGGCTCGGTACATATCAGGAACCGTACGGGGGAAGGAAGGCTTCATCACCAGCACCAAGGAACAGCAGTCTGACGAATACCTGGGCTTGGGAGGGAACGTTGATCGCAAACAGATAGCAAGCATTCAGGAGTCTATTGGGGAGACCAGCTCACAAAGTGTGGTAGTCGCTGTGGACCGGATATTCACAGGCTCTACCAGACTGGATGGAAATGCTATCGTGGACTTTGTACGATGGCTGTGTGCTGTATCGATGGATGAATTGGCCTCCCCTACACACCCTCGAATGTTCAGTCTGCAAAAGATCGTGGAGATATCGTACTACAACATGGGTCGTATCAGGCTGCAGTGGTCCAGGATATGGGAGGTTATAGGGGATCATTTCAATAAGGTCGGCTGTAATCCCAATGAGGATGTTGCTATTTTCGCTGTGGACTCTTTGAGGCAGCTATCCATGAAATTTTTGGAGAAAGGAGAGTTGGCCAATTTCAGATTCCAGAAGGATTTCCTCAGGCCGTTTGAGCACATAATGAAAAAGAACAGATCTCCTACCATTAGAGACATGGTGGTCCGCTGCATAGCCCAGATGGTCAACTCTCAGGCTGGGAATATTAGATCAGGGTGGAAGAACATTTTCTCTGTGTTTCATCTCGCTGCCTCCGATCAGGATGAGAGCATAGTGGAGCTGGCCTTCCAGACAACTGGACACATCGTCACGAATGTATTTGAGAAGCATTTCCCAGCTACCATTGACTCCTTCCAGGACGCTGTCAAATGTCTGTCTGAGTTCGCCTGCAACGCTTCTTTCCCCGACACCAGCATGGAGGCCATCCGTCTCATCCGTCACTGCGCTAAATACGTCTCCGACCGACCTCAGGCGTTTAAAGATTGCACCAGTGATGATATGAACGTCGCACCGGAGGACCGTGTTTGGGTGAGAGGCTGGTTCCCCATCCTCTTTGAGCTGTCATGCATCATCAACAGGTGTAAGCTGGACGTCCGGACCAGGGGTCTGACAGTAATGTTTGAGGTGATGAAGACGTACGGTCACACCTACGAGAAACACTGGTGGCAGGATCTGTTCCGCATTGTGTTCAGGATCTTTGACAACATGAAGCTTCCTGAGCAACAGACTGAGGCAACGGAGTGGATGACCACCACCTGTAATCATGCACTTTATGCTATCTGTGACGTTTTCACACAGTACTTTGAATCTCTGAGTGATGTTCTGTTAGATGATATCCTCTCTCAGCTCTACTGGTGTGTGCAGCAAGATAATGAGCAATTAGCGAGATCAGGCACTAATTGCCTTGAAAACGTGGTCATCCTCAATGGTGAGAAGTTTAACCCTGAGACCTGGGACAAGACATGCAACTGTATGCTAGACATCTTCAAAACCACCATCCCACACATGCTGCTGACGTGGAGACCGGCTGGTACAGAGGGAGATCATGTGACTCAGCTGGACTCTGATAAACAGCTGGACTCCATTTCCCAGAAGTCAGTGGATATTCAGACTCGGTCAGATGACCAGCAGTCTGTAAACAGCATGGAGAAGGCTTTGGCTGACAACCGCAGACAGAAAGCCCAGGAACAGAGGCTGTTTGCAGCTCTGCTCATAAAGTGTGTGGTCCAGCTGGAGCTCATTCAGACCATAGACAACATTGTGTTCTTTCCTGCAACCAGTAAGAAGGAGGATGCTGAAAACTTTGCAGCAGCACAGAGAGATGCTTTGGATGCTGATGTACATGTGGACACTCAGGACCAGGGAATGTATCGCTACCTGACCTCAGAACAGCTCTTTAAACTGCTCGACTGTCTGCTGGAGTCTCATCGCTTTGCCAAGGCCTTTAACTCCAATAACGAACAGAGAACCGCGCTGTGGAAGGCTGGTTTCAAAGGGAAGTCGAAGCCCAATCTGCTGAAACAGGAGACCAGCAGCCTGGCGTGTGGCCTGCGTATCCTCTTCCGCATGTACATGGACCAGAGCAGGCAGGACGCCTGGGAGGAGGTGCAGAAAAGACTGCTCAATGTGTGCAGTGACGCTGTGGCTTACTTTCTGACGCTGACGTCTGAGAGCCACCGTGAGGCCTGGACCAACCTACTGCTGCTCTTCCTTACCAAAGTGCTCAAGATCAGTGATGACAGGTTCAAGGCCCACGCGTCCCGATACTACCCTCTGCTTTGTGAGATCATGCAGTTTGACCTGATCCCGGAGCTGAGGGCCGTCCTGCGCAAGTTCTTCCTGCGCATCGGATTGGTGTTCCAGATCACCCAGAGTTTGGAACAAGATCAGCCTCCGGGCGTCCAAACTCCCAACGACGCCTAGAAGCAGCAGCAGCAGTGCCTGTCCCTGAATGCCACAGACGTCTCCTCTTTTCATCTGCTGTCTGAAACACTGCAGGACGTGATCTTCTGATCTCCTGCAACAAATGAGGAACGAGGAGATACAGAAAAGATGGACTACGTCAGATATGATGGTACTAAAATCAACCCCCCGCCTGCCCTTTCAGGATCTGCTTTGGACAAACAGCCAATCACAGATCAGGAACCGTCTCCCACCCACCGGACTAATGACCAGGCCTTGTACAATAGGATCAAATTATCTAGAACATCATGAAGATGCTGAATATCGCTACTACTATACAAATTGCTTGACCTTTGAGATCTTCAAAAGGTCCAGATATATTTCAAAACAGTGTCTTGGCATTATATTAAA

Function

symbol description
arfgef1 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within protein transport and regulation of ARF protein signal transduction. Predicted to be located in Golgi apparatus and perinuclear region of cytoplasm. Is expressed in brain. Orthologous to human ARFGEF1 (ADP ribosylation factor guanine nucleotide exchange factor 1).

GO:

id name namespace
GO:0032012 regulation of ARF protein signal transduction biological_process

KEGG:

id description
K18442 ARFGEF, BIG; brefeldin A-inhibited guanine nucleotide-exchange protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_03035039_03102978.mRNA True 6899 mRNA 0.49 42 3034649 3103604

Neighbor

gene id symbol gene type direction distance location
CI01000018_02950311_03005969 KIAA1468 coding downstream 28445 2949847 ~ 3006204 (-)
CI01000018_02931983_02940190 NA coding downstream 94229 2931926 ~ 2940420 (-)
CI01000018_02922931_02928062 NA coding downstream 106587 2922332 ~ 2928062 (-)
CI01000018_02910647_02918787 NA coding downstream 115862 2910431 ~ 2918787 (-)
CI01000018_02906370_02908615 NA coding downstream 126034 2906225 ~ 2908615 (-)
CI01000018_03108551_03121242 CPA6 coding upstream 3486 3107090 ~ 3121242 (-)
CI01000018_03570664_03575338 CSRNP1B, CSRNP1 coding upstream 466573 3570177 ~ 3575338 (-)
CI01000018_03661621_03698552 NA coding upstream 557458 3661062 ~ 3698780 (-)
CI01000018_03727931_03736733 SLC22A13 coding upstream 624180 3727784 ~ 3737067 (-)
CI01000018_03745369_03779384 OXSR1, OXSR1A, OXSR1B coding upstream 641765 3745369 ~ 3779384 (-)
G104073 NA non-coding downstream 88904 2945546 ~ 2945745 (-)
G104069 NA non-coding downstream 125284 2908925 ~ 2909365 (-)
G104036 NA non-coding downstream 218996 2815427 ~ 2815653 (-)
G104025 NA non-coding downstream 248754 2785665 ~ 2785895 (-)
G104084 NA non-coding upstream 1694 3105298 ~ 3105576 (-)
G104099 NA non-coding upstream 71720 3175324 ~ 3202607 (-)
G104115 NA non-coding upstream 102776 3206380 ~ 3207820 (-)
G104121 NA non-coding upstream 115532 3219136 ~ 3264709 (-)
G104144 NA non-coding upstream 191663 3295267 ~ 3296407 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 633746 2389201 ~ 2488018 (-)
G103842 NA other downstream 1074591 1959497 ~ 1960058 (-)
G104968 NA other upstream 378500 3482104 ~ 3500514 (-)
G105104 NA other upstream 904093 4007697 ~ 4017817 (-)
G105200 NA other upstream 1139863 4243467 ~ 4246010 (-)
CI01000018_04856240_04875704 DAP other upstream 1751477 4855081 ~ 4876532 (-)
CI01000018_06021105_06025859 NA other upstream 2787732 6020861 ~ 6025876 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00019420 arfgef1,LOC107584936,LOC107727224,LOC107595140,LOC107758297 coding CM030124.1 CM030124.1 19367972 ~ 19400055 (-)