CI01000018_03802116_03809432 (CRY-DASH)


Basic Information

Item Value
gene id CI01000018_03802116_03809432
gene name CRY-DASH
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 3801686 ~ 3809432 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_03802116_03809432.mRNA
ATGTCCGCTTCTCGTACGGTCATATGTCTGCTGAGAAACGACCTGCGTCTGCATGATAACGAGGTGTTTCACTGGGCTCAGAGGAATGCCGAGCACATAATCCCCCTCTACTGCTTCGATCCGCGTCATTACCAGGGCACCCATCACTTCAACTTCCCTAAAACTGGTCCGTTCCGTTTACATTTCCTCCTGGACAGTGTGAAAGACCTGAGGGCAACACTGAAGAAACGGGGAAGCACGCTGGTCGTCAGACAAGGAAAGCCGGAGGATGTTGTTGGTGATTTGATTAAGCAGCTGGATTCAGTCACAGCTGTGGCATTTCATGAAGAGGTGGCGTCAGAGGAAAAGACTGTGGAGAAGAAGCTAAAGGACATCTGCTGCCAAAACAAAGTCAAAGTTCAGACTTTCTGGGGGTCTACACTTTACCACAGAGATGATCTGCCATTCAGTCACATTGGAGGGTTACCTGACGTTTACACCCAGTTCAGAAAGGTGGTTGAGGGACAGGGCAGAGTGCGACCTGTCCTTTCCACCCCGGAACAGGTTAAATCTCTTCCCCTTGGACTGGAGGAGGGTCCTATACCTACGTTTGAGGGCCTGGGACAGACAGAGTCGGCGATGGACTGCCGCTCGGCCTTCCCGTGCCGCGGTGGAGAGACTGAGGCTCTTGCTAGGCTAAAACATTACTTCTGGGATACAAATGCCGTCGCGACTTATAAGGAGACTCGGAATGGCATGATCGGAGTGGACTATTCCACAAAGTTTTCTCCTTGGCTTGCGTTGGGCTGCATATCTCCCAGATATATCTATGAGCAGATAAAGAAGTATGAGGCAGAACGAACCGCCAACCAAAGCACATACTGGGTGATATTTGAACTTCTGTGGAGAGATTACTTCAAGTTTGTGGGTTTAAAATATGGAAACAGAATATTTCATATGAATGAGGGAAGAACTGGGGTGCCGTTTGTAGATGCGAACATGAGGGAGCTTGCACTGACAGGATTCATGTCCAATAGAGGACGTCAAAATGTGGCTAGCTTTCTGACCAAGGACTTGGGTTTAGACTGGAGACTGGGCGCTGAGTGGTTTGAATACCTGCTGGTAGACCATGACGTCTGCAGCAACTATGGAAACTGGCTCTATAGTGCCGGAATAGGAAATGACCCACGAGAAAACAGGAAGTTTAATATGATCAAACAAGGACTGGACTATGACAATAACGGGGACTATGTCCGACAGTGGGTTCCAGAACTTGGAGGTATTAAAGGTGGGGACGTGCACACGCCCTGGACCCTCAGCAACTCGGCACTCTCACACGCAAAGGTTTCGCTCAACGACACATACCCTTCCCCAATCGTCATAGCGCCTGAGTGGAGCCGTCATGTCAACAACAAATCATCTGGTCCATCATCAGCAAAAGGGAGGAAGGGCTCATCTTACACACCAAGACAACACAAAGACAGGGGCATCGACTTCTACTTCTCCAAGAAAAAGAGTTTCTGAGGATGAGATGTAGTGGATTAGTGCTTTTTCTTGAGCTGCGTCACAAATAATAATAGGGCATCTGCTCAGGTCACAGGTTACAGAATGGAATGAGGAAGGGGAAATGAAAAATATTGTGGTTTTGGGTTGCTCTTTCTGAATCTGTTTTCACACACAGATACAGAAACTGCTGCTCATATTTTGAGGACATTATGACAAAATGTAGCTCTAATTTTCATGTGTTTGTATATACTGTATTGAATACAATATTGTATTTTTGGTTGTTTTCATAAATCCCTGCGAATATCCTGGTTTAGTCAAGGACGATGAAAAGTTGATGAAGATAAAGGTTGTTATACCTATATTTTTTGGGGGGGAGTTTTACCTTTCTCACATGAAACAGTGATATGTAATGTAAATTATAGACAAACTGTCAAAACGTTTTAATAAA

Function

symbol description
cry-dash Enables damaged DNA binding activity; deoxyribodipyrimidine photo-lyase activity; and flavin adenine dinucleotide binding activity. Acts upstream of or within photoreactive repair.

GO:

id name namespace
GO:0000719 photoreactive repair biological_process

KEGG:

id description
K01669 phrB; deoxyribodipyrimidine photo-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_03802116_03809432.mRNA True 1933 mRNA 0.46 13 3801686 3809432

Neighbor

gene id symbol gene type direction distance location
CI01000018_03795661_03800529 MYD88 coding downstream 1157 3795526 ~ 3800529 (-)
CI01000018_03745369_03779384 OXSR1, OXSR1A, OXSR1B coding downstream 22302 3745369 ~ 3779384 (-)
CI01000018_03727931_03736733 SLC22A13 coding downstream 64619 3727784 ~ 3737067 (-)
CI01000018_03661621_03698552 NA coding downstream 102906 3661062 ~ 3698780 (-)
CI01000018_03570664_03575338 CSRNP1B, CSRNP1 coding downstream 226348 3570177 ~ 3575338 (-)
CI01000018_03814990_03841716 MAP3K20 coding upstream 5359 3814791 ~ 3841716 (-)
CI01000018_03888251_03907553 DLEC1 coding upstream 78107 3887539 ~ 3909175 (-)
CI01000018_03942344_03955439 VILL coding upstream 132655 3942087 ~ 3955439 (-)
CI01000018_03965992_03984331 NA coding upstream 156507 3965939 ~ 3985519 (-)
CI01000018_03991163_03994220 NA coding upstream 181118 3990550 ~ 3994238 (-)
G105090 NA non-coding downstream 97787 3703444 ~ 3703899 (-)
G105084 NA non-coding downstream 110328 3691083 ~ 3691358 (-)
G105079 NA non-coding downstream 120175 3681192 ~ 3681511 (-)
G105077 NA non-coding downstream 121705 3679304 ~ 3679981 (-)
G105072 NA non-coding downstream 128624 3672846 ~ 3673062 (-)
G104963 NA non-coding upstream 1979 3811411 ~ 3812546 (-)
G105115 NA non-coding upstream 275111 4084543 ~ 4085146 (-)
G105140 NA non-coding upstream 277094 4086526 ~ 4086789 (-)
G105142 NA non-coding upstream 277712 4087144 ~ 4087354 (-)
G105141 NA non-coding upstream 279958 4089390 ~ 4092340 (-)
G104968 NA other downstream 301172 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 1400783 2389201 ~ 2488018 (-)
G103842 NA other downstream 1841628 1959497 ~ 1960058 (-)
G105104 NA other upstream 198265 4007697 ~ 4017817 (-)
G105200 NA other upstream 434035 4243467 ~ 4246010 (-)
CI01000018_04856240_04875704 DAP other upstream 1045649 4855081 ~ 4876532 (-)
CI01000018_06021105_06025859 NA other upstream 2081904 6020861 ~ 6025876 (-)
G106538 NA other upstream 2721015 6530447 ~ 6533512 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023403 cry-dash coding NC_007135.7 CM002908.2 20194022 ~ 20208474 (-)