CI01000018_04657706_04674073


Basic Information

Item Value
gene id CI01000018_04657706_04674073
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4657571 ~ 4674073 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_04657706_04674073.mRNA
TGAAAGTCTTTGCGCCTCTGTTCGCTGTCCATCCTATTTCATGATCACACAAGGGTCGAGGAAGAAACTGTTATGCATTCACGCGATGCGTGCAGGAAAGAGGCTTTTGACCGTAAAATGCACATTGGAAGAGACTGATTTGATGAGTTCTGACCCATTTAAACTGGACATCATTGAAGGACAAACTGTGGAAATTTACAGTGCATGTCAACAAAACAGCTCAGATGGGCTTAAATGTCTCTGCTATCAAAGGATAAATTCCTCTATGGATCCATTACAGAACACTGAGAGATTTGGAAATGGAATATACACTGTAATCTGTGGCAATCATAGTGTTACAGTTATTCAGTCACCACAAAGGAGGCCATCAGTTCCAGTGCTCAAAGCTATTGCAAAAGAAGGGAGTAGCAATTTAGCTCAATTAGTGTGTACTTCTGAGGGGAACCCAAAACCAACCATCAGGTGGTATGGTAGCAGTAAAAAACCAAAGGAGAGCATGACGAATAAGAGGTATAAGACAGAGAGCATTCTGAAGGATTACCATCATCCTGAATCTCCAAATGTAAAGTGCTGTGCCTATAATTCACTGGGAGAAGAATGTACTAAGATCTATAATTACGATCTGGTTACAAATGTGGACGGGCAAAAACCTCCTATGATTTTCCTGAAATCTGGTTGGTCTCTGCTACTCCGTTGCACCATAAAACTTAAAGACCCTGGAAACCCTGAATTGAGATGGAACTTCAATAACACAGCAGTCAAGGGAATTACTTCAATACATTTTTGGGATTGGGCAGAGCACTTTTTTATCGAATCAGTTAATGTAACACATAGTGGGGAGTACATCTGCTCATCTAAATACAACCACACTAAAACCTATGTCAAGGTCTTTGAAAATGATAAAATCGACATATTGCAGTTGAATGAGAACAACCGCATACTAGCAAAAAATAAGGCAAGCTTCTGCTTCCAGGCTCAGGTGTTCTCCTTTCCAAAAGCCCAGTGTCACTGGATTACACCAAATCAAACCGAAATACAGGGCAGAGCGACTCATCACCTTAATTTTAATAGCACTTTTGAGCTGTGTGACCCTGAACCGGGCCAGTATCAAATGAAACTAAAGACTCAAGAGTATAGTGTCACAAGGAATATCTCTCTCTGCATTTTAGACATTCATTCAATTAAAATAGGCAAAGATTCAAGCTTCACCACTTGTGAGACTCAAAGCCCTCTACCTGTGAATGTCTCTTGGAAGATCTGTCCATCACATGCTGACTGTACTGAAGATGAAGACTGGAAAGAGATGCCTGTTGCCCAGCCCAAGTTCATGGATTCAGATCAGTTCTGTCATAAGAAAATTCACTTTGCCAGACCACACTCGAACTGGGAGGACATTTATATTAAATGCTGCATCACTAACGAAGCAGGGACTGACTGCAGTGATCAAACACCAGTGCAAACGAGTTTCCGCATTGAATATGTGATTTGTTTCCTGCTCATTTTCATACTCCTCGTGGTCGTCTTTGCCTTAATCATCTTCATCAGAGTTAAGAAGCCTGCGTACCAGTGTCAGATCCAGATGATTCAGATGGTCGGACCCAATGACAATGACTACATATACATTGATTTCAAGGAGTTTAAATATGACCTGAAATGGGAATTTCCACGAGAAAATCTTGAGCTTGGAAATGAGCTAGGATCTGGTGCTTTTGGGATGGTTGTGCAGGCTACAGCATATGGGATCAGCAAGCCAGGAGTGTCCATTCAGGTAGCAGTAAAAATGTTAAAGGACAAGCACCAGGCAGTGGAGAAGGAAGCTCTGATGTCTGAACTGAAAATGCTGACTCATATTGGACACCATGAAAACATTGTCAACTTGCTCGGAGCTTGCACAGGCTCAGGTCCTATTTACCTGATATTCCAGTATTGCTGTAACGGAGATCTCTTGAACTACCTGAAGAGTAACAGGGAACGTTTTCACAAATATCTGACGGATGCTTTCAACAGGGACAGATTTAGAGGCCTCTACCACAACTTCCAGCAGAAGAGAAACTCCAGTGGGTATGTTGAGCCTGATAACAGCCCATGTCTGCACGTGACTCTTACAAGCAAAGGACAGGAGAACGAGGCACTGCTCAGTCCCAGCATCAGCTCAGTGTCTACTGTTGAGGAAATGCTTGAATGTGAAGACAAACTTCAAGAAGAGGAACTTCAGAGTCTCACCTATGATGACCTCCTGAGTTTCTCTTTTCAAGTTGCAAAGGGCATGGAGTTCCTGTCCTCTAAAAATGTGCGTTTGCCCGTGAAGTGGATGGCTCCTGAGAGTATTTTCAAAGGGGTCTACACTATGCAGAGTGACGTCTGGGCCTATGGCATTCTTCTATGGGAAATCTTTTCTCTAGGAGTCACGCCATATCCTGGTATAACTGTGAATAACGCATTCTACAGAATGATTGAAAGTGGATATCACATGGAGCAACCCTATTATGCAGCAGAATCTGTATACAGTGTAATGTGTCGCTGCTGGACACTGGATCCTGTAGATCGACCTTGTTTCTCCAAGCTTGTGGCTTTCATGGAAAAAGAGCTGGCTGCTTTGGAAGAGAGGCTATATTACAATGTCGGAGGATACTGCCACAATGAAGTAACATACCAGAATGCACCAGTGACCCCTGATGCTACATTGATGGAGAATAAACAGGATGTCTACCGGTCCAGCACTGAGGATTCACATGAATGCGAATCCATGCACAGTCTTGGATCAAGTTGCCTACTTGCCCCAACGGACATTGACCTCGTCCAGTATTGGCTTTTGCCATTTCCAGAACAGTTTGTAGAGGACATGGCCATGGACATAAGTGTTGTAAATGCTCTCACATACGAGGAATTTGTGAATCTATTCGGTAATGTGGTTGAGAAATGCCCCATCATTTCTGCTGCAATATGGTCCCACCGGCCTTTCAAAGATCTAGCAGACATCGAGGCTCACATAATGGGATTCATTCACAGTCTACCAGACTCAGGTAAAGAGGGCATTTTGCGGTGTCATCCTGATTTGGCGGGCCGAGATCTCCAGAGCGGGACACTAACACGGGAGTCTCAAGAAGAGCAGAGTCAAGCCGGTATGACCACACTGGATTCTGCAGAGATTCAGCACATGTACCGTCTAAACTCGAAGTACAAGGAACGCTTTGGCTTCCCTTTTGTCATCTGCGCCCGCCTCAACAACAAAGCGGATATTGTGCGCCAACTGACTGAACGCCTGAAGAATGACCGCGCAGAGGAGCGGGAGCGCGCGATCGAAGAGGTTAAAAAAATCTGTAGCCTCAGGTTAAACAATATTGTCCTATCTGACATTCAAACCAAACTGTGACTCAAGTTAACTTTACAAAAGTGTTTACTGCCTCTCTCTAGGTACTTGATTGTATATCATTTTAATTTGTATGTTAATTTGTGTAAAATAAGAAAACACAAAAAGCAAGTAGGCTAGCCTATGCTGACAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_04657706_04674073.mRNA True 3508 mRNA 0.43 24 4657571 4674073

Neighbor

gene id symbol gene type direction distance location
CI01000018_04627321_04645724 LNX2A, LNX2 coding downstream 11389 4627169 ~ 4646182 (-)
CI01000018_04604468_04611851 USP12.S, USP46, USP12, USP12.L, RGD1561481, USP12A, USP12-LIKE coding downstream 45720 4603787 ~ 4611851 (-)
CI01000018_04595424_04596449 GPR12 coding downstream 59984 4594465 ~ 4597587 (-)
CI01000018_04557779_04561445 RNF6 coding downstream 95574 4557636 ~ 4561997 (-)
CI01000018_04491510_04539751 ATP8A2 coding downstream 117820 4491235 ~ 4539751 (-)
CI01000018_04738374_04757471 NA coding upstream 64207 4738280 ~ 4757471 (-)
CI01000018_04759598_04770734 TMPRSS7 coding upstream 85436 4759509 ~ 4770734 (-)
CI01000018_04773554_04792048 SPATA13 coding upstream 99153 4773226 ~ 4792048 (-)
CI01000018_04798056_04800698 C1QTNF9 coding upstream 123905 4797978 ~ 4800698 (-)
CI01000018_04803745_04804788 TAGLN3B, TAGLN3 coding upstream 129044 4803117 ~ 4804796 (-)
G105209 NA non-coding downstream 6224 4649881 ~ 4651347 (-)
G105328 NA non-coding downstream 35943 4621351 ~ 4621628 (-)
G105199 NA non-coding downstream 42191 4612697 ~ 4615380 (-)
G105213 NA non-coding downstream 69796 4584628 ~ 4587775 (-)
G105307 NA non-coding downstream 203093 4454261 ~ 4454478 (-)
G105336 NA non-coding upstream 67588 4741661 ~ 4741921 (-)
G105350 NA non-coding upstream 93538 4767611 ~ 4768386 (-)
G105413 NA non-coding upstream 584239 5258312 ~ 5258511 (-)
G105219 NA non-coding upstream 608633 5282706 ~ 5284386 (-)
G105464 NA non-coding upstream 690977 5365050 ~ 5489735 (-)
G105200 NA other downstream 411561 4243467 ~ 4246010 (-)
G105104 NA other downstream 639754 4007697 ~ 4017817 (-)
G104968 NA other downstream 1157057 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 2256668 2389201 ~ 2488018 (-)
G103842 NA other downstream 2697513 1959497 ~ 1960058 (-)
CI01000018_04856240_04875704 DAP other upstream 181008 4855081 ~ 4876532 (-)
CI01000018_06021105_06025859 NA other upstream 1217263 6020861 ~ 6025876 (-)
G106538 NA other upstream 1856374 6530447 ~ 6533512 (-)
CI01000018_06639339_06649926 NA other upstream 1966539 6639207 ~ 6649971 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023428 flt3 coding NC_007135.7 CM002908.2 21691939 ~ 21713883 (-)