CI01000018_04798056_04800698 (C1QTNF9)


Basic Information

Item Value
gene id CI01000018_04798056_04800698
gene name C1QTNF9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4797978 ~ 4800698 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_04798056_04800698.mRNA
TTGTATTGATCAATGCTGCAGAGCAGAGCGCTCCTGACAAAAATTCCGGCTGTGTTTACGGTCACCCTGGGATCCCTGGAGATCCAGGACACAATGGAATGCCTGGTCGTGATGGCAGAGATGGGGCCAAAGGTGATAAAGGAGATAGAGGTGATATAGGAACATGTGGCGAAGCTGGTAAAAACGGACCAAAAGGAGATAAAGGAGAACCTGGTGTTCCTGGCATAGCCGGTATGAAGGGGAAGCATGGAGACAATGGAGAAAGGGGCCCCCCTGGTAAAATGGGGCCCCAAGGCTTCTCAGGGCCACTGGGTTTGAAAGGTCAGAAGGGAGAACTTGGTTTGCCAGGACCACAGGGCATCAAAGGGGACGTGGGTCCTATAGGCCCTGAAGGACCACAAGGAGACAGAGGCTATAAGGGAGACAAGGGCATACAGGGTCCTTTTGGGCCCCCAGGACGACCAGGCCCAAAAGGTGAGCTCGGCCACCAAGGTATCAAAGGCAGCATTGGTGTTCGTGGTGAGAAAGGGTCAAAAGGGGACATCGGGGAGCAAGGTCCAAAGGGGGACATGCCTGAGATACCAAAAAGTGCCTTCTCAGCTAGACTGAGCGAAAGCACCAAGTTACCTGCTGCTAATGCTCCAATTCGCTTTGATAAAATCCTCTATAATCGTCAGGGTCATTATGACCCTGAGACCGGCCGCTTTACTTGTGCCATCAGCGGAGCATATTTTTTCTCCTACCATATCACTGTCTACTCTCGCAATGTAAAAGTGGTCTTGATGAAGAATGGTCAGCGAGTGATCTACACTATGGACAGCTACCAAGGAGCTGAGGACCAGGCTGCTGGAGGGGCCGTCCTAGAACTGGAGGTCGGAGATAAAGTGTGGTTGCAAGTGGCTGATAAACAGCTATTTAACGGGTTATATGCAGATGAAGACGATGACACTGTTTTTTCTGGATTTCTTCTTTTTGCAACCTAAAGATGTTGCCCCAAAGAGGAATACAGTGGTGCAAATCCATGCTTTGAATTCACTCGTGTTATTATAATTTTCAATAAA

Function

symbol description
c1qtnf9 Predicted to be located in extracellular region. Orthologous to several human genes including C1QTNF9 (C1q and TNF related 9).

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_04798056_04800698.mRNA True 1061 mRNA 0.49 3 4797978 4800698

Neighbor

gene id symbol gene type direction distance location
CI01000018_04773554_04792048 SPATA13 coding downstream 5930 4773226 ~ 4792048 (-)
CI01000018_04759598_04770734 TMPRSS7 coding downstream 27244 4759509 ~ 4770734 (-)
CI01000018_04738374_04757471 NA coding downstream 40507 4738280 ~ 4757471 (-)
CI01000018_04657706_04674073 NA coding downstream 123905 4657571 ~ 4674073 (-)
CI01000018_04627321_04645724 LNX2A, LNX2 coding downstream 151796 4627169 ~ 4646182 (-)
CI01000018_04803745_04804788 TAGLN3B, TAGLN3 coding upstream 2419 4803117 ~ 4804796 (-)
CI01000018_04807843_04810778 ABHD10B, ABHD10 coding upstream 6868 4807566 ~ 4810778 (-)
CI01000018_04811791_04814940 ACOT9.2, ACOT9.1, ACOT9 coding upstream 10940 4811638 ~ 4816478 (-)
CI01000018_04817413_04821724 ACOT9.1 coding upstream 16205 4816903 ~ 4821724 (-)
CI01000018_04825678_04826167 NA coding upstream 24743 4825441 ~ 4826167 (-)
G105350 NA non-coding downstream 29592 4767611 ~ 4768386 (-)
G105336 NA non-coding downstream 56057 4741661 ~ 4741921 (-)
G105209 NA non-coding downstream 146631 4649881 ~ 4651347 (-)
G105328 NA non-coding downstream 176350 4621351 ~ 4621628 (-)
G105199 NA non-coding downstream 182598 4612697 ~ 4615380 (-)
G105413 NA non-coding upstream 457614 5258312 ~ 5258511 (-)
G105219 NA non-coding upstream 482008 5282706 ~ 5284386 (-)
G105464 NA non-coding upstream 564352 5365050 ~ 5489735 (-)
G105526 NA non-coding upstream 693138 5493836 ~ 5494106 (-)
G105939 NA non-coding upstream 865155 5665853 ~ 5666088 (-)
G105200 NA other downstream 551968 4243467 ~ 4246010 (-)
G105104 NA other downstream 780161 4007697 ~ 4017817 (-)
G104968 NA other downstream 1297464 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 2397075 2389201 ~ 2488018 (-)
G103842 NA other downstream 2837920 1959497 ~ 1960058 (-)
CI01000018_04856240_04875704 DAP other upstream 54383 4855081 ~ 4876532 (-)
CI01000018_06021105_06025859 NA other upstream 1090638 6020861 ~ 6025876 (-)
G106538 NA other upstream 1729749 6530447 ~ 6533512 (-)
CI01000018_06639339_06649926 NA other upstream 1839914 6639207 ~ 6649971 (-)

Expression


Co-expression Network