CI01000018_05528561_05576788 (ZFHX4)


Basic Information

Item Value
gene id CI01000018_05528561_05576788
gene name ZFHX4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 5528561 ~ 5576788 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_05528561_05576788.mRNA
ATGGAAACTTGTGACTCCCCTTCTCTCTCAAGGCAGGAAAATGGGCAGCAGATATCAAAGCTACGTGAGACGACACATCTTGATAATGAGGTGCCAGAGAAAGTCCCTGGGATGGAGCCTGACAAGGAAAACAGCCCTGCGGATGACAACCTGAGGACGGAGGAGAGCCGTCGAGAGACCGCATCAGGACTGAACGCGGAGAATGCGATAGGTGCGGCCACTAAAGACATCCCCTGCAACGAATGTGCCACTTCCTTCTCGAGTTTACAAAAATACATGGAGCACCACTGCCCGAACGCTCGCCTTCCCCTTCTGAAGGACGAGAACGAGAGCGAGGTCAGCGACCTTGAGGACAGCGATGTAGAGAACCTGACAGGAGAGATAGTTTACCAGCCAGATGGCTCAGCTTTTATTCTTGAGGACTCCAAAGAAGGTGGCCAGAATGCCCAGTCAGGGGTCAAAAGCCTCTTCTCCCCAGCACTGTTTTCAAACTCTCAAACTGCAGCCGGGGACAAGACTGAGCAGTCGGCCACAGCCCCCATGTCCTTTTATCCACAAGTGATCAATACCTTTCACATCGCTTCATCCCTCGGGAAACCATTTACGGCCGATCAGGCTTTCCCAAATACCTCAGCATTAGCAGGAGATGGTCCTGTGTTGCACAGTTTCCGTGTCTACGATCTCCGACACAAGAGTGATAAAGACTATCTTACCATTGATGGTGCAGCCAAAAACTCCTGTGTGTCCAAAGATGTTCCAAACAATGTGGACTTGTCTAAATTTGATGGTTGCATTAGTGATGGGAAAAGGAAACCTATTCTGATGTGTTTCTTGTGCAAGTTGTCTTTTGGTTATAGTAGGTCATTTGTAACCCATGCTGTGCATGATCATCGGATGACCCTCAATGAGCAGGAGCAGAAGCTCCTTAGTAATAAATATGTCTCTGCCATCATACAGGGCATTGGTAAAGACAAAGAACCTCTTATAAGCTTTCTGGAACCAAAAAAAAACAATTCTGTGTTACCACATTTTTCTACTGCAAACTTCATGGGCCCTGATCCAGGCATTCGCAGCCTGTGGAACACCTTTCACATGGAAAACGGTGATTCCCTGCAGGCTGGTTTCGCCTTCCTGAAAGGAAGTGCCAGTTTGGCATCTTCTGCAGACCAGTCGCCCAGGAGTGCCCAGATGCCAAAGGCTGAACTGAACCTCGGGGTTGCGGCCACCTCGGCGCTCAAGTCCCCCGTCGGCTCCGCGTCTCTCCAGCGCTCGTCACCAGGGTCGGCTGGGTGCAGGGATCAGGAGAGCAACTGTGAACGGCAGAAGGACGTTAGCACTTTGCATGCGAATGGTGAGCTCCCCATTAAAAGCGAGCCCAGAGATGTGGCTGATGCTGAGGAGGACGAAGACATGTATTCGAACGAGCTCGACGACGATGGTGTTTGTGAACTTGGGGATAGTACCAGTAGCAAAGATTTCCCTCTCTTAAACCAAAGCATTTCTCCTTTTTCGTCCAGTGTGCTAAAATTTAGTGAAAGGGGTACTACTTCCTCTGTGACTGTTGCCAATGACCTAGAGAAGACAAAGCAAGCTGCTGCCAGCTTGGACTACAGCAATGACTCTACGAGTGGAGGCAGCAAAGACGGCTGTGACTCCAACAGCGGCAGGGATGGCAGTCCACCATCTCTTCCTCTTGACCTGATGCGACGAGATGACGAGAGCCCAGGCCCACTGCACCAGCATGCTGCCACGCCCAGCACCCCTGGCACCCCTGGCCCAGGAGAGGGCTCTCCTGGAAGTGGAATTGAATGCCCCAAGTGTGACACTGTCTTAGGTTCCTCCCGTTCACTTGGTGGTCACATGACCATGATGCACTCACGGAACTCTTGCAAGACGCTGAAATGCCCCAAATGCAATTGGCACTACAAATACCAGCAGACCCTGGATGCTCACATGAAGGAGAAGCACCCAGAGTCTGGAGGCTCTTGCGTCTATTGCCGCACGGGCCAGCCTCATCCTCGACTAGCCCGGGGCGAGAGCTATACCTGCGGCTACAAACCTTTCCGCTGTGAGGTGTGCAACTACTCCACAACCACCAAAGGCAACCTTAGCATACACATGCAGTCAGACAAGCACCTCAACAATGTGCAGACGCTGCAGAACGGAGGAACTGAAGCCATCTACAACCACACTGCTCCTGTGTCAAACGCCAGCCTGAGCGGATGTGGTACGCCCTCGCCCTCCAAGCCCAAACAGAAGCCCACGTGGCGATGTGAGGTCTGCGACTATGAGACCAACGTAGCTCGCAACTTGCGCATTCATATGACAAGTGAGAAACACATGCACAACATGATGCTTCTTCAGCAGAACATGAAGCAGATCCAGCACAATCTGCATCTAGGTTTGGCGCCGGCCGAGGCAGAGCTCTACCAGTACTACCTGGCCCAGAACATCGGCCTCACCGGGATGAAACTGGATAACCCTTCAGACCCGCAGATGATGATCAACCCCTTCCAGCTTGACCCTAACACTGCCGCAGCTCTGGCTCCTGGTCACGTAAATAATGAGCTGCCTGCGGAGCTGCGTCTTGTGAGTGGTCAGCTAATGGGTGATGACCTGTCCGTCCTCTCTGCTGGGGAGCTGTCACCTTGCATCAACGACCCGCTGCTGAAACTCTTCCAGTGCGCGGTGTGCAACAAATACAGCTCTGACAGCCTGGAGGCCCTCAGCGGGCACGTGGCGGCAGAGAGATCGCTTCCGGAAGAGGAGTGGAGAGCCGTGATGGGAGACGTCTACCAGTGCAAGCTGTGCAACTACAACACGCAGCTCAAGGCCAATTTCCAGCTCCACTGCAAGACCGACAAGCACATGCAGAAGTATCAGCTGGTGGCCCACATCAAGGAAGGTGGCAAAGCCAACCAGTGGCGTCTCAAGTGCATTGCCATCGGCAACCCCGTGCACCTGAAGTGCAATGCCTGTGACTACTACAGCAACAGTGTGGAGAAGCTAAGACTGCATGCAACCAACCAGAGGCACGAAGCGGCGCTGAAGGTCTACAAGCACTTGCAAAAACAAGAGAGTGCATGTAACTCGGAGTCCTGCTACTACTACTGCGCGTTGTGCGACTACTCCAGCCGAGCCAAGCTGAACCTGCTGCAGCACCTCCGCTCGGTCAAGCACCAGCAGACCGAAGGTCTCCGCAAGCTGCAGCTGCACCAGCAGGGCCTTCCTCCAGACGAAGACAACCTTGCCGATATTTTCTTCGTCAAGGACTGCCCTCCGAACGAATCGGAAGAACCAGGTGAAGACAGCGAGGAATCCCCACGAGCCTCCTCATTGGCCGCGGCCGAGGACAAAGACTCGAGCAAGAGGGACGCCATAGAAGGCAAGACAACAGAGAAGGACTCCAGAATTAATACACTGGCTAAAGAAACCCTGGGGACTGCTACAGCAGGGAAGCGGTCGCTTCAGCAGGAGAAAGAAAATGACACTCCAACCAAGAGGGCTAAATCAGCTGAAGAGAAGACGCTGTCCAATGAGCAGGTGCAGCAGTGCCCATACTGTAATTACAGTAACAAGGATGCAAACCGTTTACAGCTGCACATCATGTCCCAGCATTCCATGCAGCCTGTCATCAGCTGCCCCTTGTGTCAGGATGTTCTCAGCAACAAGATTCACTTGCAGCTGCATCTCACCCACCTCCATAGCGTGGCTCCAGACTGTGTGGAGAAGTTACTTATGACAGTTGCAGGTCCAGATGTTACAGTGCCCAATTCCTTGCTGTCTGTATCATTACAAGACAAAGTCCCATCTTTGATGGATTCTTCAGCTGTTATCCCTGAGGGATCTGGAAAACCCATGGGAAACAGCTCTAAGGATTTGAAAAGCAGCACAGGCCAAGACAAAAGTGAGGTTGAACCTTCCAATGAGGAACTCAAACCACCAAAGGAGGCTGCTGAGGCCCCTGACTGGAAGAAAGCGAGTGGGCAAGACAGGAAGAGCCCAGACTCCCTGCAGGAGCATCTTGGTGATCTTCAGAAGCGCCAGCAGCTTTCAGTGTCTGATCGTCACGTCTACAAATACCGCTGCAACCATTGCAGCCTGGCTTTCAAGACTATGCAGAAGCTTGAAATACATTCCCAGTACCACGCCATCCGTGCAGCCACCATGTGCAGTCTGTGCCAGCGCAGCTTCAGGACATTCCTTGCCCTTCGAAAGCATTTGGAGACTGGTCACCCTGAGCTGAGTGAAGCCGAAGTGCAGCAACTCTGTGGGAACCTACCCCTAAATGGTGACATAGCTGAGAGTGAGATGCGGGCTCTGGAAGAGGCACAAGCTTTTGAGCACGAGCTAGACAAAGATGAGGAACTTGATCAAGAAGGGAAGGCCAGTCCGACTGGAAGTGACAGCAGCTCCTTGCTTGATGATATGGGCTCAGAGCCAAAGCGGACCTTGCCTTTTAGAAAAGGTCCTAATTTCACCATGGAAAAATTTCTAGACCCCTCACGTCCATACAAATGCACAGTATGCAAAGAGTCTTTCACCCAAAAGAACATTCTCCTTGTTCACTACAATTCTGTATCACATTTGCATAAGCTAAAGAAAGTTATCCAAGAGGCCTCAAGCCCAGTTCCCCAGGAGACTAGCAACAATGTTGACAACAAACCATACAAATGCAATATCTGTAACGTTGCTTATAGCCAAAGCTCAACCCTGGAGATTCACATGAGGTCTGTACTTCATCAGACAAAAGCACGAACCGCCAAAATGGAGACTAGTACCAGTAGTGGGAGTGGTAGCAGCGGAAATACTTCATCTAAAAGCCCTGTTCCACTTAATCAGGGAAACACTGATTCTGCAAGTGCACCGGTATCCTCTAACAAAGAAAACACTGTAGATGCCAAAGAAGTTACCATGAAACAAACTACTGATCACATCTCTGTGCAGCCCACCCACCCACCAACCCAGTCACCAGCACAGCTTCAGATGCAACTGCAGCATGAGCTCCAGCAGCAAGCTGCCTTCTTTCAGCCACAGTTTCTGAACCCAGCTTTCTTCCCACACTTCCCAATGACACCAGAAGCTCTACTGCAATTCCAGCAGCCCCAGTTCCTCTTCCCATTCTACATCCCTGGTGCAGAATTTAACATCAGCCCTGAGCTCGCATTGCATTCAGCTGCGTTTGGGATGCCTGGTATG

Function

symbol description
zfhx4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain; midbrain neural keel; pharyngeal arch; and retinal ganglion cell layer. Orthologous to human ZFHX4 (zinc finger homeobox 4).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09380 ZFHX4; zinc finger homeobox protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_05528561_05576788.mRNA True 5199 mRNA 0.52 8 5528561 5576788

Neighbor

gene id symbol gene type direction distance location
CI01000018_05472889_05494284 NA coding downstream 33191 5472651 ~ 5495370 (-)
CI01000018_05412935_05458370 NA coding downstream 70119 5412710 ~ 5458442 (-)
CI01000018_05222497_05243379 ZC2HC1A coding downstream 285182 5222497 ~ 5243379 (-)
CI01000018_05163296_05172812 NA coding downstream 355749 5163027 ~ 5172812 (-)
CI01000018_05037255_05110400 CTNND2A coding downstream 418161 5037255 ~ 5110400 (-)
CI01000018_05588289_05597432 NA coding upstream 11171 5587959 ~ 5597822 (-)
CI01000018_05667742_05668807 NA coding upstream 90831 5667619 ~ 5669240 (-)
CI01000018_05803227_05816159 HNF4G coding upstream 226121 5802909 ~ 5816493 (-)
CI01000018_05820608_05821533 NA coding upstream 243122 5819910 ~ 5821533 (-)
CI01000018_05827740_05839214 PIGN coding upstream 250788 5827576 ~ 5839214 (-)
G105526 NA non-coding downstream 34455 5493836 ~ 5494106 (-)
G105464 NA non-coding downstream 38826 5365050 ~ 5489735 (-)
G105219 NA non-coding downstream 244175 5282706 ~ 5284386 (-)
G105413 NA non-coding downstream 270050 5258312 ~ 5258511 (-)
G105350 NA non-coding downstream 760175 4767611 ~ 4768386 (-)
G105939 NA non-coding upstream 89065 5665853 ~ 5666088 (-)
G105948 NA non-coding upstream 119970 5696758 ~ 5697110 (-)
G105956 NA non-coding upstream 144730 5721518 ~ 5721849 (-)
G106013 NA non-coding upstream 222369 5799157 ~ 5799386 (-)
G106017 NA non-coding upstream 270557 5847345 ~ 5847559 (-)
CI01000018_04856240_04875704 DAP other downstream 652722 4855081 ~ 4876532 (-)
G105200 NA other downstream 1282551 4243467 ~ 4246010 (-)
G105104 NA other downstream 1510744 4007697 ~ 4017817 (-)
G104968 NA other downstream 2028047 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 3127658 2389201 ~ 2488018 (-)
CI01000018_06021105_06025859 NA other upstream 314548 6020861 ~ 6025876 (-)
G106538 NA other upstream 953659 6530447 ~ 6533512 (-)
CI01000018_06639339_06649926 NA other upstream 1063824 6639207 ~ 6649971 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023449 zfhx4 coding NC_007135.7 CM002908.2 23241444 ~ 23323526 (-)
bowfin (Amia calva) AMCG00019489 zfhx4,LOC107721891,LOC107590192 coding CM030124.1 CM030124.1 23670530 ~ 23674685 (-)