CI01000018_06493607_06502730 (ZDHHC20)


Basic Information

Item Value
gene id CI01000018_06493607_06502730
gene name ZDHHC20
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 6493345 ~ 6502730 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_06493607_06502730.mRNA
ATGGCGCCTACACATGTACTGAGATGCTGCCAGAGGGGTCTGGCGTGGATTCCGGTTATATTCATTGCCTTAGTTGTGTGCTGGTCGTATTATGCATACGTGGTGGAGCTGTGTATATTAACTATTCACAACACTGGCGAAAAATTCATCTACCTGGTAGTGTTTCACCTGTCATTCATCATGTTTGTATGGTCGTACTGGAAAACCATCTTTACAAGACCAGCAAACCCTTCCAAAGAGTTCTGTCTACCCAAATCTGAGAAGGAACAGTATGAGAAGGAACAGCGTCCAGAAACTCAGCAGGAGATCCTGAAGAGAGTGGCCACCAGTCTGCCCCTCTACACCCGCACCGGAGCAGGAGCTGTCCGGTACTGTGACCGCTGCCAGGTCATCAAGCCAGACAGATGTCATCACTGTTCTGCGTGTGACATGTGTGTACTAAAGATGGATCATCACTGTCCCTGGGTGAATAACTGTGTGGGTTTCTCCAACTACAAGTTCTTCATCCTGTTCCTGACCTACTCGCTTGTTTACTGTTTATTCATCGCAGCTTCTGTCCTCCAATACTTCATCAAGTTCTGGACACTTTTGCTCTCCTGCTGTGTTCTTCCTGCGTCTAACAGTCTGTCTCTGTTTGCACTAAGCTTTGTCGGAGGAAATCGGCAGAGAATTGTCCAAAGGTTGTGTCGGAGTGACATGTTGCCCATGTCTTGCTCATTGTTGATCTTTGTCTCACAGCTCTCCTTTCTCTCTCCCCCCCTCTCTCAGAGTGACCTGCCAGAGTCTCACGCCAAATTCCATGTCTTGTTTCTCTTTTTTGTGGCGGCCATGTTCTGCATCAGCATTCTTTCACTCTTCACTTACCACTTGTGGCTTGTGGGAAAAAACAGGTCCACCATAGAAGCGTTCAGAGCCCCAGTCTTCAGAAACGGCCCTGATAAAAATGGATTTTCCCTGGGCTTCAGCAAGAACATTGCTCAGGTGTTTGGGGACCAGAAGAAGTACTGGCTACTTCCTGTCTTTACCAGGCCTGCACAGACCCCTGAAGTCATGCAGACTTCACCTGCATACAAGCTGTTCCCCAAGTGTTTACCAGGAAATGCACCACATCTGGTACCAACTGCTGTTTACGTGAGGGGAAAGTGGAATTTTTTTTTTCTGGATCTTTACCAAGTGAATAGTCTGACCGAGCTCATCTTAAATCCCATGTGCCACAGAGTGTCGCCGGCTTCAGAGTTAACGGACACGATGGCTCATTCGCACTTTTAAATTCATTACTAAAGAGGTTTTTTTTTTTTTGGAATATTATACTTTTTTTAAACTTCATTGACGTTCTTCTAAGATATAAACACACACGTGTTCACAAAGTGCAACGGAGTGTGACCAGGCAGAGGACGCCTACAAAAGACCCTTGTGTATTATTAAGCTGCTCCACTTGTGTGGTGACTTTTATTATTTTTTTGTCATTCTTGAGATGATTCTGGTGTGAAATGTTGTGCACACGTCGGCCACTTTACGTATGCCAAATAAA

Function

symbol description
zdhhc20 Enables protein-cysteine S-palmitoyltransferase activity and zinc ion binding activity. Involved in peptidyl-L-cysteine S-palmitoylation. Located in intracellular membrane-bounded organelle and plasma membrane. Is integral component of Golgi membrane.

GO: NA

KEGG:

id description
K20028 ZDHHC2_15_20; palmitoyltransferase ZDHHC2/15/20

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_06493607_06502730.mRNA True 1531 mRNA 0.46 11 6493345 6502730

Neighbor

gene id symbol gene type direction distance location
CI01000018_06484577_06490112 SLC51A coding downstream 3233 6484577 ~ 6490112 (-)
CI01000018_06475800_06482278 PDK3, PDK3A coding downstream 11054 6475309 ~ 6482291 (-)
CI01000018_06425724_06426234 CRH, CRHB coding downstream 67111 6425346 ~ 6426234 (-)
CI01000018_06370452_06384112 PDE7A coding downstream 108579 6370118 ~ 6384766 (-)
CI01000018_06353801_06362659 ARMC1 coding downstream 129304 6353722 ~ 6364041 (-)
CI01000018_06503908_06515370 NUP58 coding upstream 1052 6503782 ~ 6515370 (-)
CI01000018_06547019_06585316 PHLDB2 coding upstream 43656 6545849 ~ 6585316 (-)
CI01000018_06598234_06605351 PLCXD2 coding upstream 95251 6597981 ~ 6605934 (-)
CI01000018_06639339_06649926 NA coding upstream 136477 6639207 ~ 6649971 (-)
CI01000018_06665847_06684600 NA coding upstream 163057 6665787 ~ 6684600 (-)
G106495 NA non-coding downstream 1582 6491240 ~ 6491763 (-)
G106484 NA non-coding downstream 18920 6471528 ~ 6474425 (-)
G106498 NA non-coding downstream 109856 6380753 ~ 6383489 (-)
G106479 NA non-coding downstream 224641 6268467 ~ 6268704 (-)
G106477 NA non-coding downstream 240299 6252799 ~ 6253046 (-)
G106539 NA non-coding upstream 33613 6536343 ~ 6536648 (-)
G106541 NA non-coding upstream 35153 6537883 ~ 6538167 (-)
G106543 NA non-coding upstream 37706 6540436 ~ 6540674 (-)
G106579 NA non-coding upstream 205054 6707784 ~ 6707988 (-)
CI01000018_06021105_06025859 NA other downstream 467469 6020861 ~ 6025876 (-)
CI01000018_04856240_04875704 DAP other downstream 1617506 4855081 ~ 4876532 (-)
G105200 NA other downstream 2247335 4243467 ~ 4246010 (-)
G105104 NA other downstream 2475528 4007697 ~ 4017817 (-)
G104968 NA other downstream 2992831 3482104 ~ 3500514 (-)
G106538 NA other upstream 27717 6530447 ~ 6533512 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 misc CM030122.1 CM030122.1 11832428 ~ 11947322 (-)