CI01000018_06696391_06705674 (PTCHD1)


Basic Information

Item Value
gene id CI01000018_06696391_06705674
gene name PTCHD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 6695758 ~ 6705674 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_06696391_06705674.mRNA
CGCAGTGACGAATGTCTTAAGTCGGCAAGGAAATGCACACAAGTGGCCGAGCTGGATCTGCGCGGAGATCGCACGCATTCTGCACCGCGGGTCGGTGGTGGAGATTCGTGTTTTCAGACTGGTAACGGCGGATAGCGGTCGTGCTGGGCGCGGTACGAGATTAATATGGATCAATGACATTCACCTAATAGATAATGGAATACACAAAACTGTATTTGCGCATTTGAAACTGTTTAAATCGCGCTTGTCTGAGAAGATAACCGTAGCAACGTTTCACTACTCGAACGCTGTGGGATGGATGTTGCGACAAGTGTTGCACGAAGGGCTTAGGACGTCATTCCACAAACTGGGCCACTTTGTCGCCAATCACCCGGTGTTTTTCGCCTCCGCGCCCGTGCTGATTTCCATCCTGCTGGGCGCGAGCTTCAGCAGATACCGCATAGAGGAAAACGTGGAGTACCTGTTAGCTCCCAAACACAGCCTGGCGAAGATCGAGGGGAACTTGGTGGATAGTTTGTTCCCCGTGAACCGGTCCAAACACACGCTGTACTCGGACTTGCAAACACCCGGGAGATATGGCCGGGTCATCGTGACTTCGCGCAGGGGGAGCGTGTTGGACCCCCACCACGTCAACTCGGTCCTAAAGTTACACAACACAATCACTCAGATCCAGGTTCCTATGCTGGGATTCAACTACACCTTTGCCCACCTCTGCTTACTGGACGATAGCAAGAGCTGCATCGTGGACGACATCCTGCGGGTTCTGGAAGAGATGAGATCGGCACGGGCTTCCAACCGTTCAGCACCCCCTCTGCGTTATCCAATCACCAAACTCAAAGATGGACGGGAGGCCTACATTGGGCACCAACTGGGCGGAGTCCTGGCAGGTGGAGGGAGAGACGGGGTGCGTTCTGCTCGAGCCCTTCAACTCACATACTACCTGCAAGCGGCCAGCCCACTGAACGAAGTGGTGGCGGCCAGCTGGGAGTTGCTGTTCTGCAGGGAGCTGGAGAACTTTGTTAAAGCTCATCCGGAGCTTAGTCTGTACCCTTTTACCTCCTCTTCTCTTCAGAGGGACTTCCAAAGGACCAGTCGTGTATCAGAGCGGCCGCTGCTCTTTAGCCTGGCTGCATGTCTCTCACTAGCCATGCTGTGCTGCTCAATGCGAGACTGTGTGCGTACAAAGCCTTGGCTGGGTCTGCTGGCTCTAGTGACCGTCAGCCTTGCTACACTCACCTCTGCCGGCATCTTCAACCTCACAGGAGGGAAATACAATTCAACATACCTGGGCATCCCTTTTGTCATGTTAGGTCATGGCTTGTTTGGCACATTTGAGATGCTGTCGTCTTGGCGTCGGACACGCGAGGACCAGCATGTGAAGGAGCGGGTTGCTGCTGTATTCTCAGACTGTATGCTGCCCTTCACAGCTAGCACGGCCTTGCACGTGGTCACCTTCGGCATCGGGGCCAGTCCGTTCACAAACATTGAGGCCGTGCGTCTCTTCTGTCGGAACGCCTGTATCTCAGTTCTCTTCAACTACCTCTACATCCTCACCTTCTACGGCTCCAACCTGGTGTTTGCCGGCTACCTGGAAAACAACTACCGTCACAGTCTATTCTGCAGGCGCGTACCGAAGCCTGAGTTGCTGCAGCAGAAGCCGGCGTGGTACCGCTTCCTCATGTACACACATTACAACGAGGAGGCCACAGAAGCAGGACCCCTACGTGCTTACGAGAGTCACCTGCTGGTAGCCTTTATGAAACGGTACTACTGTGACTGGATCACCAACACCTACGTCAAACCATTCGTAGTTCTTTTCTACTTGGTCTATGTTTCCTTCGCCCTCATGGGCTACCTTCAGGTCAGTGAAGGGTCAGATCTTAGTAATGTGGTTGCCACAGAAACAAGCACTATAGCATACACCCGTGCCCAGCAGCGGTATTTCAGCAGTTATAGCCCTGTGATTGGCTTCTACATCTATGAGTCCATTGAGTACTGGAACACCAGCGTGCAAGAGGACTTACTGGAGTACACCAAAGGTTTTGAACGCATCTCCTGGTTCGAGAGTTACCTCAACTACCTTCACGGGCTGAACATCACCACTAGCTTGTCACGCAGCAACTTCACAGAGCGCCTGCGGTCTGGCTTTCTACGCCAACCCCGCTATGTGCATTTCTCAGACGATATCATCTTTGCCAAACGTACGGATGGGGAATTTGATGTGGTGGCCTCGCGTATGTTTCTCGTGGCCAAGACGACAGAAAACAAACGAGAAGAGATGTCAATCCTACTGGACACACTGAGGAAGTTGTCGCTGACCTCCAGGGTGAAGTTCATCATCTTCAATCCATCCTTTGTGTATATGGACCGCTATGCCTCATCGGTTGGAGCACCGCTGAAGAACTCTTGCATCGCTGCTCTCTTTCTGCTTTTCTTTTCCACCTTCTTGGCAGCTGACCCACTGGTCAACGCCTGGTTGACTGTGACAGTAGCCTCTGTTGAGTTCGGGCTGGTGGGTTTCATGACTCTGTGGCGGGTAGAGTTGGATTGTGTCTCAGTGCTGTGTCTGATCTACGGGGTGAACTATGCTGTGGACTCCAGCGCTCCGCTGGTATCTGCATTTGCTCTAGGCCGGGAATCCACTCGTACGCGCTGGGTGAAACTGGCTCTGGAGCGACATGGAGTTCCTGCCCTGCAGAGCTACTTGTGTTATGGGGCAGCTCTGCTCCCTCTCGCGGCCGTGCCCTCGAACCTTACACGCACACTCTTCAGGTGCCTCTTTCTCACCGCCATCATCACCGCCTTCCACTGTTTGGCCATTCTCCCTGTCCTGCTTACCTTCCTTCCTCCCTCCAAGAAAAAACGATGTGAGAGAAAGAATGGTGCGGAAAACAGGGAAGAAATTGAGTGCATGGAGATGGTGGACAGCACACGTGTGGTTGATCAGATTACCACTGTCTGACCACATGCCTGAAAAAGAGAGGCAGGCTGCAGGATGTACAAGAGAGAAAAAAACAAAACACCCCCAAGGGGGTGACAGAGGAAGACCTGAGGTACGAGAGTTGGCCTTTGTGCAGCTGGGCTTCCAGTTACCATACTTAGGGCAGAGATGGCTTTTAAGTACTTCATGGGTGTACTTTAGCATAAACAAGTATGAGCCCACATTTTAAAAAAGGCTTTTGTTTGATGGTAAAAGCAGAAGATGAGTTTGAGGTTGAGCCATTAGTGCTATATGTATTGTTGTCATGGTAAAAGCCCTATGCAGGTTTGCTGCAGCTCAATGAGAGCGAGGAAGGCCAGATGAACCACACTGCTGCACAGTTGCAGATAATCACAGAGGGGGGCTTCTCTGGTCTGCAGTATTACAGCAGCAGTAGAGCGGAAACAGTAACAAGCTATTGCTTTGACAAAGCATAGATAGAGACTTACAATATTTCTGATGCCCCAAGAACCATAACAAGACTTTCAAGGGCACTAAGCTAAAGTCCAAGCAGCCATATTCATATCTGCTGATAGCCATGACTTTAATGTGCCCCTCTTCTCAGAGGTTAGAGGTTTTGGTGAGACCATATTTTTGGAATATAGTGGTATTAAA

Function

symbol description
ptchd1 Predicted to be involved in chemical synaptic transmission and cognition. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and synapse. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human PTCHD1 (patched domain containing 1).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_06696391_06705674.mRNA True 3595 mRNA 0.52 5 6695758 6705674

Neighbor

gene id symbol gene type direction distance location
CI01000018_06665847_06684600 NA coding downstream 11158 6665787 ~ 6684600 (-)
CI01000018_06639339_06649926 NA coding downstream 45787 6639207 ~ 6649971 (-)
CI01000018_06598234_06605351 PLCXD2 coding downstream 89824 6597981 ~ 6605934 (-)
CI01000018_06547019_06585316 PHLDB2 coding downstream 110442 6545849 ~ 6585316 (-)
CI01000018_06503908_06515370 NUP58 coding downstream 180388 6503782 ~ 6515370 (-)
CI01000018_06730933_06741559 PHEX coding upstream 24673 6730347 ~ 6742049 (-)
CI01000018_06757523_06763462 MBTPS2 coding upstream 51082 6756756 ~ 6764763 (-)
CI01000018_06789511_06854837 CNKSR2.L, CNKSR2 coding upstream 83621 6789295 ~ 6854837 (-)
CI01000018_06881855_06890718 CHRND coding upstream 175925 6881599 ~ 6890718 (-)
CI01000018_06937758_06953871 KLHL24 coding upstream 230355 6936029 ~ 6953871 (-)
G106543 NA non-coding downstream 155084 6540436 ~ 6540674 (-)
G106541 NA non-coding downstream 157591 6537883 ~ 6538167 (-)
G106539 NA non-coding downstream 159110 6536343 ~ 6536648 (-)
G106495 NA non-coding downstream 203995 6491240 ~ 6491763 (-)
G106579 NA non-coding upstream 2110 6707784 ~ 6707988 (-)
G106581 NA non-coding upstream 8129 6713803 ~ 6714006 (-)
G106663 NA non-coding upstream 318397 7024071 ~ 7024676 (-)
G106672 NA non-coding upstream 319997 7025671 ~ 7033706 (-)
G106538 NA other downstream 162246 6530447 ~ 6533512 (-)
CI01000018_06021105_06025859 NA other downstream 669882 6020861 ~ 6025876 (-)
CI01000018_04856240_04875704 DAP other downstream 1819919 4855081 ~ 4876532 (-)
G105200 NA other downstream 2449748 4243467 ~ 4246010 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023482 ptchd1 coding NC_007135.7 CM002908.2 25347503 ~ 25364775 (-)
bowfin (Amia calva) AMCG00016540 NA coding CM030122.1 CM030122.1 24669212 ~ 24683200 (+)