Gene
RNA
| Item | Value |
|---|---|
| gene id | G103976 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000018 |
| NCBI id | null |
| chromosome length | 7078422 |
| location | 2334697 ~ 2334901 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU118256 | True | 205 | lncRNA | 0.49 | 1 | 2334697 | 2334901 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000018_02282563_02282856 | NA | coding | downstream | 51625 | 2282554 ~ 2283072 (-) |
| CI01000018_02195642_02198053 | SKIDA1 | coding | downstream | 135297 | 2193361 ~ 2199400 (-) |
| CI01000018_02138741_02148435 | ARMC3 | coding | downstream | 186262 | 2138644 ~ 2148435 (-) |
| CI01000018_02135812_02137218 | MSRB2 | coding | downstream | 197479 | 2135750 ~ 2137218 (-) |
| CI01000018_02129101_02134686 | C8G | coding | downstream | 200011 | 2128393 ~ 2134686 (-) |
| CI01000018_02356445_02369996 | CUL1B, CUL1A, MGC114992, CUL1.L, CUL1 | coding | upstream | 21025 | 2355926 ~ 2370015 (-) |
| CI01000018_02381118_02382741 | NA | coding | upstream | 45997 | 2380898 ~ 2382749 (-) |
| CI01000018_02389202_02488018 | CNTNAP2, CNTNAP2A | coding | upstream | 54301 | 2389201 ~ 2488018 (-) |
| CI01000018_02537614_02606018 | NA | coding | upstream | 202609 | 2537510 ~ 2606161 (-) |
| CI01000018_02613387_02620287 | CNTNAP2 | coding | upstream | 278123 | 2613024 ~ 2620287 (-) |
| G103969 | NA | non-coding | downstream | 17615 | 2316858 ~ 2317082 (-) |
| G103967 | NA | non-coding | downstream | 25847 | 2308284 ~ 2308850 (-) |
| G103966 | NA | non-coding | downstream | 26977 | 2306337 ~ 2307720 (-) |
| G103965 | NA | non-coding | downstream | 29725 | 2304344 ~ 2304972 (-) |
| G103964 | NA | non-coding | downstream | 30641 | 2303840 ~ 2304056 (-) |
| G103859 | NA | non-coding | upstream | 4408 | 2339309 ~ 2343042 (-) |
| G103989 | NA | non-coding | upstream | 129221 | 2464122 ~ 2464384 (-) |
| G103991 | NA | non-coding | upstream | 149293 | 2484194 ~ 2484961 (-) |
| G103994 | NA | non-coding | upstream | 168355 | 2503256 ~ 2503471 (-) |
| G103995 | NA | non-coding | upstream | 176871 | 2511772 ~ 2512208 (-) |
| G103842 | NA | other | downstream | 374639 | 1959497 ~ 1960058 (-) |
| G104968 | NA | other | upstream | 1147203 | 3482104 ~ 3500514 (-) |
| G105104 | NA | other | upstream | 1672796 | 4007697 ~ 4017817 (-) |
| G105200 | NA | other | upstream | 1908566 | 4243467 ~ 4246010 (-) |
| CI01000018_04856240_04875704 | DAP | other | upstream | 2520180 | 4855081 ~ 4876532 (-) |
