Gene
RNA
| Item | Value |
|---|---|
| gene id | G104025 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000018 |
| NCBI id | null |
| chromosome length | 7078422 |
| location | 2785665 ~ 2785895 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU118311 | True | 231 | lncRNA | 0.40 | 1 | 2785665 | 2785895 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000018_02613387_02620287 | CNTNAP2 | coding | downstream | 165378 | 2613024 ~ 2620287 (-) |
| CI01000018_02537614_02606018 | NA | coding | downstream | 179504 | 2537510 ~ 2606161 (-) |
| CI01000018_02389202_02488018 | CNTNAP2, CNTNAP2A | coding | downstream | 297647 | 2389201 ~ 2488018 (-) |
| CI01000018_02381118_02382741 | NA | coding | downstream | 402916 | 2380898 ~ 2382749 (-) |
| CI01000018_02356445_02369996 | CUL1B, CUL1A, MGC114992, CUL1.L, CUL1 | coding | downstream | 415650 | 2355926 ~ 2370015 (-) |
| CI01000018_02906370_02908615 | NA | coding | upstream | 120330 | 2906225 ~ 2908615 (-) |
| CI01000018_02910647_02918787 | NA | coding | upstream | 124536 | 2910431 ~ 2918787 (-) |
| CI01000018_02922931_02928062 | NA | coding | upstream | 136437 | 2922332 ~ 2928062 (-) |
| CI01000018_02931983_02940190 | NA | coding | upstream | 146031 | 2931926 ~ 2940420 (-) |
| CI01000018_02950311_03005969 | KIAA1468 | coding | upstream | 163952 | 2949847 ~ 3006204 (-) |
| G103996 | NA | non-coding | downstream | 271412 | 2513698 ~ 2514253 (-) |
| G103995 | NA | non-coding | downstream | 273457 | 2511772 ~ 2512208 (-) |
| G103994 | NA | non-coding | downstream | 282194 | 2503256 ~ 2503471 (-) |
| G103991 | NA | non-coding | downstream | 300704 | 2484194 ~ 2484961 (-) |
| G103989 | NA | non-coding | downstream | 321281 | 2464122 ~ 2464384 (-) |
| G104036 | NA | non-coding | upstream | 29532 | 2815427 ~ 2815653 (-) |
| G104069 | NA | non-coding | upstream | 123030 | 2908925 ~ 2909365 (-) |
| G104073 | NA | non-coding | upstream | 159651 | 2945546 ~ 2945745 (-) |
| G104084 | NA | non-coding | upstream | 319403 | 3105298 ~ 3105576 (-) |
| G103842 | NA | other | downstream | 825607 | 1959497 ~ 1960058 (-) |
| G104968 | NA | other | upstream | 696209 | 3482104 ~ 3500514 (-) |
| G105104 | NA | other | upstream | 1221802 | 4007697 ~ 4017817 (-) |
| G105200 | NA | other | upstream | 1457572 | 4243467 ~ 4246010 (-) |
| CI01000018_04856240_04875704 | DAP | other | upstream | 2069186 | 4855081 ~ 4876532 (-) |
| CI01000018_06021105_06025859 | NA | other | upstream | 3105441 | 6020861 ~ 6025876 (-) |
