G104099


Basic Information

Item Value
gene id G104099
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 3175324 ~ 3202607 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU118390
ACCTATAGAGCACCGGCTCCGGTTTAAACTGGTGCTTGTCTGTAACGTGGTGGATGATGCCATTTTCCAGGAGGGCTTGACCCAAATGTACCCCCTCCTCAGGGTTATTGGTCTCTCCGATTTCCATCAGCCACGACACAAACTCACTTCCAAGGAAGCACTTTGGGAAGGTGGTGAGTTTGCGCTTGCGGTCCTTAATGAGGTGGCCCTGTTTACTCATGAGGTTATAAAGCTTCTCGCCTTTCTCAGATATCATCACCCAGGTGTCCTGCTCCATGCCCAGTCTCAATGTTTTTCGTCTTTCTCTCTCTTTTAAAATGGCCTCCAGCCATTCCTGCTTCTCCTCCGGTGTCTTTGCCATGCAGACGAACCACTTGTTCTTTGCTGTGTTGTGGATCTTCCAGCCGTTGTTCACGATGTTCCCGCTGCTGTGGTAATCCGCTGTTCCATCATCCACATTCTCCACCTCCATGACCTCAGTGTTGATTCTGCCTCGAAACAGGTAACGAGGACCCTCAGTGGCAGTCTTACTGTTTTTCAAACGCCTGTTCTTCTTCTTACAGTACACCAGCAAGTTGTCAAAGAGGAAGAAGATGCGTTCCTGGATGTTCCCCGCAGAGATCTTCAGCAGAACTCCCTGCATGAGCATCTCCGTACAGCTGTCTGTGATGTTAGAGCCCTCCCAGCCCTCAATATGAGACTGCCACTCTTCCAGCACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU118390 True 719 lncRNA 0.50 7 3175324 3202607

Neighbor

gene id symbol gene type direction distance location
CI01000018_03108551_03121242 CPA6 coding downstream 54082 3107090 ~ 3121242 (-)
CI01000018_03035039_03102978 ARFGEF1 coding downstream 71720 3034649 ~ 3103604 (-)
CI01000018_02950311_03005969 KIAA1468 coding downstream 169120 2949847 ~ 3006204 (-)
CI01000018_02931983_02940190 NA coding downstream 234904 2931926 ~ 2940420 (-)
CI01000018_02922931_02928062 NA coding downstream 247262 2922332 ~ 2928062 (-)
CI01000018_03570664_03575338 CSRNP1B, CSRNP1 coding upstream 367570 3570177 ~ 3575338 (-)
CI01000018_03661621_03698552 NA coding upstream 458455 3661062 ~ 3698780 (-)
CI01000018_03727931_03736733 SLC22A13 coding upstream 525177 3727784 ~ 3737067 (-)
CI01000018_03745369_03779384 OXSR1, OXSR1A, OXSR1B coding upstream 542762 3745369 ~ 3779384 (-)
CI01000018_03795661_03800529 MYD88 coding upstream 592919 3795526 ~ 3800529 (-)
G104084 NA non-coding downstream 69748 3105298 ~ 3105576 (-)
G104073 NA non-coding downstream 229579 2945546 ~ 2945745 (-)
G104069 NA non-coding downstream 265959 2908925 ~ 2909365 (-)
CI01000018_02906370_02908615 NA non-coding downstream 266500 2906225 ~ 2908615 (-)
G104036 NA non-coding downstream 359671 2815427 ~ 2815653 (-)
G104115 NA non-coding upstream 3773 3206380 ~ 3207820 (-)
G104121 NA non-coding upstream 16529 3219136 ~ 3264709 (-)
G104144 NA non-coding upstream 92660 3295267 ~ 3296407 (-)
G105071 NA non-coding upstream 470024 3672631 ~ 3672841 (-)
G105072 NA non-coding upstream 470239 3672846 ~ 3673062 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 774421 2389201 ~ 2488018 (-)
G103842 NA other downstream 1215266 1959497 ~ 1960058 (-)
G104968 NA other upstream 279497 3482104 ~ 3500514 (-)
G105104 NA other upstream 805090 4007697 ~ 4017817 (-)
G105200 NA other upstream 1040860 4243467 ~ 4246010 (-)
CI01000018_04856240_04875704 DAP other upstream 1652474 4855081 ~ 4876532 (-)
CI01000018_06021105_06025859 NA other upstream 2688729 6020861 ~ 6025876 (-)

Expression


Co-expression Network