G104115


Basic Information

Item Value
gene id G104115
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 3206380 ~ 3207820 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU118412
TATAAACCTCACTATATTTTCTTTGATTTATGCATAAAACATCCTGGTTGACACTTGGGATGAGATATGACAAAATAAAAAAAGATATGACAAAATAAAAAGACAACGTTGACAGAGATACAATGTCAAAGAAACAAAAAAAAAAAGAAAAAAGGTATAATCAGACAGAAACACAGAAACAAAGAGAGGAAATAGAAAAGAGAGACAATGAAACAAACAGCTATCATACCGTGATGCATGAATCCATTGTCACACAGTTCCACCCCCAAGATCAGCGCCTCTTCTCTGCTTCGGCAGTCACCCTGTGCTATCAGCCAGTCGATCAGCTTGTTGGCCATTACCACCGATTTATACGTTCGAAGATGATAATCCTTATCCCTGTGTGGAAAACAAGGAACGTTTGACTTGACCAGTTCACAAATGTCTCCTCTTTACAGTAGCCTCAAGAGACACACATTTCAAGTTGACTGTTAACCTTTGTCTTGACTTGCATCCGCTTGAAAAGCTCTTGAGAGAGATGTTCTGGGTTTTCAGAATCACAACAACCCTTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118412 True 553 lncRNA 0.39 2 3206380 3207820

Neighbor

gene id symbol gene type direction distance location
CI01000018_03108551_03121242 CPA6 coding downstream 85138 3107090 ~ 3121242 (-)
CI01000018_03035039_03102978 ARFGEF1 coding downstream 102776 3034649 ~ 3103604 (-)
CI01000018_02950311_03005969 KIAA1468 coding downstream 200176 2949847 ~ 3006204 (-)
CI01000018_02931983_02940190 NA coding downstream 265960 2931926 ~ 2940420 (-)
CI01000018_02922931_02928062 NA coding downstream 278318 2922332 ~ 2928062 (-)
CI01000018_03570664_03575338 CSRNP1B, CSRNP1 coding upstream 362357 3570177 ~ 3575338 (-)
CI01000018_03661621_03698552 NA coding upstream 453242 3661062 ~ 3698780 (-)
CI01000018_03727931_03736733 SLC22A13 coding upstream 519964 3727784 ~ 3737067 (-)
CI01000018_03745369_03779384 OXSR1, OXSR1A, OXSR1B coding upstream 537549 3745369 ~ 3779384 (-)
CI01000018_03795661_03800529 MYD88 coding upstream 587706 3795526 ~ 3800529 (-)
G104099 NA non-coding downstream 3773 3175324 ~ 3202607 (-)
G104084 NA non-coding downstream 100804 3105298 ~ 3105576 (-)
G104073 NA non-coding downstream 260635 2945546 ~ 2945745 (-)
G104069 NA non-coding downstream 297015 2908925 ~ 2909365 (-)
CI01000018_02906370_02908615 NA non-coding downstream 297556 2906225 ~ 2908615 (-)
G104121 NA non-coding upstream 11316 3219136 ~ 3264709 (-)
G104144 NA non-coding upstream 87447 3295267 ~ 3296407 (-)
G105071 NA non-coding upstream 464811 3672631 ~ 3672841 (-)
G105072 NA non-coding upstream 465026 3672846 ~ 3673062 (-)
G105077 NA non-coding upstream 471484 3679304 ~ 3679981 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 805477 2389201 ~ 2488018 (-)
G103842 NA other downstream 1246322 1959497 ~ 1960058 (-)
G104968 NA other upstream 274284 3482104 ~ 3500514 (-)
G105104 NA other upstream 799877 4007697 ~ 4017817 (-)
G105200 NA other upstream 1035647 4243467 ~ 4246010 (-)
CI01000018_04856240_04875704 DAP other upstream 1647261 4855081 ~ 4876532 (-)
CI01000018_06021105_06025859 NA other upstream 2683516 6020861 ~ 6025876 (-)

Expression


Co-expression Network