Gene
RNA
| Item | Value |
|---|---|
| gene id | G105185 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000018 |
| NCBI id | null |
| chromosome length | 7078422 |
| location | 4234605 ~ 4238135 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU119556 | False | 785 | lncRNA | 0.37 | 3 | 4234605 | 4238135 |
| TU119557 | True | 923 | lncRNA | 0.36 | 2 | 4234605 | 4238135 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000018_04231186_04233076 | NA | coding | downstream | 1529 | 4230919 ~ 4233076 (-) |
| CI01000018_04221457_04229417 | NA | coding | downstream | 5188 | 4221236 ~ 4229417 (-) |
| CI01000018_04118240_04160401 | VIPR1B, VIPR1 | coding | downstream | 74204 | 4117987 ~ 4160401 (-) |
| CI01000018_04075425_04081550 | NKTR | coding | downstream | 153055 | 4075405 ~ 4081550 (-) |
| CI01000018_04041639_04049792 | NA | coding | downstream | 184813 | 4040830 ~ 4049792 (-) |
| CI01000018_04239141_04241413 | CCDC58 | coding | upstream | 118 | 4238253 ~ 4241413 (-) |
| CI01000018_04248388_04258010 | KPNA1 | coding | upstream | 9987 | 4248122 ~ 4258038 (-) |
| CI01000018_04307560_04321214 | QTRTD1, QTRT2 | coding | upstream | 68786 | 4306921 ~ 4322286 (-) |
| CI01000018_04336914_04342114 | NA | coding | upstream | 98454 | 4336589 ~ 4342114 (-) |
| CI01000018_04344907_04359005 | GRAMD1C | coding | upstream | 105956 | 4344091 ~ 4359005 (-) |
| G105263 | NA | non-coding | downstream | 15696 | 4218678 ~ 4218909 (-) |
| G105261 | NA | non-coding | downstream | 23347 | 4210897 ~ 4211258 (-) |
| G105259 | NA | non-coding | downstream | 27468 | 4206905 ~ 4207137 (-) |
| G105148 | NA | non-coding | downstream | 134448 | 4099921 ~ 4100157 (-) |
| G105146 | NA | non-coding | downstream | 138040 | 4096332 ~ 4096565 (-) |
| G105277 | NA | non-coding | upstream | 47604 | 4285739 ~ 4285992 (-) |
| G105304 | NA | non-coding | upstream | 194056 | 4432191 ~ 4432482 (-) |
| G105306 | NA | non-coding | upstream | 206667 | 4444802 ~ 4445367 (-) |
| G105307 | NA | non-coding | upstream | 216126 | 4454261 ~ 4454478 (-) |
| G105213 | NA | non-coding | upstream | 346493 | 4584628 ~ 4587775 (-) |
| G105104 | NA | other | downstream | 216788 | 4007697 ~ 4017817 (-) |
| G104968 | NA | other | downstream | 734091 | 3482104 ~ 3500514 (-) |
| CI01000018_02389202_02488018 | CNTNAP2, CNTNAP2A | other | downstream | 1833702 | 2389201 ~ 2488018 (-) |
| G103842 | NA | other | downstream | 2274547 | 1959497 ~ 1960058 (-) |
| G105200 | NA | other | upstream | 5332 | 4243467 ~ 4246010 (-) |
| CI01000018_04856240_04875704 | DAP | other | upstream | 616946 | 4855081 ~ 4876532 (-) |
| CI01000018_06021105_06025859 | NA | other | upstream | 1653201 | 6020861 ~ 6025876 (-) |
| G106538 | NA | other | upstream | 2292312 | 6530447 ~ 6533512 (-) |
| CI01000018_06639339_06649926 | NA | other | upstream | 2402477 | 6639207 ~ 6649971 (-) |
